YRC Public Data Repository - Protein Structure Prediction

Protein:	CX6A2_MOUSE
Organism:	Mus musculus
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX6A2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|475705, gi\|67... - ref\|NP_034073.1\| cytochrome c oxidase, subunit VI a, polypeptide 2 [Mus musculus], gi\|475705\|gb\|AAA...	157.0	[0..1]	[97..1]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	153.0	[0..4]	[95..16]
CX6A2_RAT - Cytochrome c oxidase subunit 6A2, mitochondrial (Fragment) OS=Rattus norvegicus GN=Cox6a2 PE=1 SV=3	152.0	[0..4]	[97..1]
gi\|73958262, gi\|... - gi\|73958262\|ref\|XP_856206.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIa-heart, mitoc...	151.0	[0..1]	[97..1]
gi\|171847245, gi... - gi\|89271881\|emb\|CAJ83526.1\| cytochrome c oxidase subunit VIa polypeptide 1 [Xenopus tropicalis], gi\|...	149.0	[0..4]	[96..14]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLKVLSR SMASAAKGDH GGAGANTWRL LTFVLALPGV ALCSLNCWMH AGHHERPEFI  60
   61 PYHHLRIRTK PFAWGDGNHT LFHNPHVNPL PTGYEHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	1v54G
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits