YRC Public Data Repository - Protein Structure Prediction

Protein:	RLP24_MOUSE
Organism:	Mus musculus
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLP24_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|82995895, gi\|... - gi\|82996540\|ref\|XP_916736.1\| PREDICTED: similar to ribosomal protein L24-like [Mus musculus], gi\|829...	202.0	[0..1]	[163..23]
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	199.0	[0..1]	[111..122]
gi\|15779001 - gi\|15779001\|gb\|AAH14576.1\| Ribosomal L24 domain containing 1 [Homo sapiens]	194.0	[0..1]	[162..1]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1	194.0	[0..1]	[163..1]
RLP24_PONPY - Probable ribosome biogenesis protein RLP24 - Pongo pygmaeus (Orangutan) RLP24_PONAB - Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1	194.0	[0..1]	[162..1]
gi\|74000755 - gi\|74000755\|ref\|XP_535488.2\| PREDICTED: similar to ribosomal protein L24-like [Canis familiaris]	191.0	[0..1]	[163..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIEKCYFCS GPIYPGHGMM FVRNDCKVFR FCKSKCHKNF KKKRNPRKVR WTKAFRKAAG  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	1s1iS
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [62-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELTVDNSFEF EKRRNEPVKY QRELWNKTID AMKRVEEIKQ KRQAKFIMNR LKKNKELQKV  60
   61 QDIKEVKQNI HLIRAPLAGK GKQLEEKMVQ QLQEDVDMEE AS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.976	N/A	N/A	a.24.26	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits