YRC Public Data Repository - Protein Structure Prediction

Protein:	GLP3L_MOUSE
Organism:	Mus musculus
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLP3L_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109016095, gi... - gi\|109016095\|ref\|XP_001102928.1\| PREDICTED: similar to GPP34-related protein isoform 3 [Macaca mulat... CCDS966.1_1 - null gi\|90078452 - gi\|90078452\|dbj\|BAE88906.1\| unnamed protein product [Macaca fascicularis]	436.0	[0..1]	[285..1]
gi\|114559330, gi... - gi\|114559330\|ref\|XP_001169746.1\| PREDICTED: GPP34-related protein isoform 4 [Pan troglodytes], gi\|11... GOLPH3L - golgi phosphoprotein 3-like	436.0	[0..1]	[285..1]
gi\|57098795 - gi\|57098795\|ref\|XP_533047.1\| PREDICTED: similar to golgi phosphoprotein 3-like [Canis familiaris]	429.0	[0..1]	[285..1]
GLP3L_BOVIN - Golgi phosphoprotein 3-like OS=Bos taurus GN=GOLPH3L PE=2 SV=1	427.0	[0..1]	[285..1]
GLP3L_RAT - Golgi phosphoprotein 3-like OS=Rattus norvegicus GN=Golph3l PE=2 SV=1	423.0	[0..12]	[285..12]
gi\|220944844, gi... - gi\|220954760\|gb\|ACL89923.1\| l(2)s5379-PA [synthetic construct], gi\|220944844\|gb\|ACL84965.1\| l(2)s537... l(2)s5379-PA, l(... - The gene lethal (2) s5379 is referred to in FlyBase by the symbol Dmel\l(2)s5379 (CG7085, FBgn001070...	413.0	[0..7]	[284..15]
gi\|31197197, gi\|... - gi\|31197197\|ref\|XP_307546.1\| Anopheles gambiae str. PEST AGAP012632-PA [Anopheles gambiae str. PEST]... AGAP012632-PA, A... - golgi phosphoprotein 3\|protein_coding\|UNKN:19369809:19371967:-1\|gene:AGAP012606, Golgi phosphoprotei...	404.0	[0..2]	[284..4]
GOLP3_MOUSE - Golgi phosphoprotein 3 OS=Mus musculus GN=Golph3 PE=1 SV=1 gi\|149027294, gi... - gi\|62461580\|ref\|NP_076467.2\| golgi phosphoprotein 3 (coat-protein) [Rattus norvegicus], gi\|62205048\|...	401.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTHRTRR TEVSKSSEKK IESEEDTNQE RSPDNEDPGD SKDIRLTLME EVLLLGLKDK  60
   61 EGYTSFWNDC ISSGLRGGIL IELAMRGRIY LEPPTMRKKR LLDRKVLLKS DSPTGDVLLD 120
  121 ETLKHIKATE PTETVQTWIE LLTGETWNPF KLQYQLRNVR ERIAKNLVEK GILTTEKQNF 180
  181 LLFDMTTHPV TNTTEKQRLM KKLQDSVLER W

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNDPQRMDRR TLALLVLAHS SDVLENVFSC LTDDKYDVAM NRTKDLVELD PEVEGTKHNA  60
   61 TEMIWAVLAA FNKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.685	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.655	N/A	N/A	a.6.1	Putative DNA-binding domain
View	Download	0.637	N/A	N/A	a.65.1	Annexin
View	Download	0.611	N/A	N/A	a.28.1	ACP-like
View	Download	0.556	N/A	N/A	a.118.13	Arp2/3 complex 16 kDa subunit ARPC5

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits