YRC Public Data Repository - Protein Structure Prediction

Protein:	B9D2_MOUSE
Organism:	Mus musculus
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for B9D2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74226687 - gi\|74226687\|dbj\|BAE26994.1\| unnamed protein product [Mus musculus]	266.0	[0..1]	[175..1]
B9D2 - B9 protein domain 2	265.0	[0..1]	[175..1]
gi\|109124897 - gi\|109124897\|ref\|XP_001101041.1\| PREDICTED: similar to Y38F2AL.2 [Macaca mulatta]	264.0	[0..1]	[175..1]
B9D2_BOVIN - B9 domain-containing protein 2 OS=Bos taurus GN=B9D2 PE=2 SV=1	264.0	[0..1]	[175..1]
B9D2_RAT - B9 domain-containing protein 2 OS=Rattus norvegicus GN=B9d2 PE=2 SV=1	264.0	[0..1]	[175..1]
tza-1 - status:Confirmed UniProt:Q9N423 protein_id:AAF59476.1	248.0	[0..1]	[175..1]
gi\|57036497 - gi\|57036497\|ref\|XP_533658.1\| PREDICTED: similar to Y38F2AL.2 [Canis familiaris]	244.0	[0..1]	[175..1]
gi\|187026223, gi... - gi\|39594196\|emb\|CAE70306.1\| Hypothetical protein CBG16827 [Caenorhabditis briggsae], gi\|187026223\|em... gi\|157770694 - gi\|157770694\|ref\|XP_001677167.1\| Hypothetical protein CBG16827 [Caenorhabditis briggsae AF16]	243.0	[0..1]	[174..1]
B9D2_DANRE - B9 domain-containing protein 2 OS=Danio rerio GN=b9d2 PE=2 SV=1	237.0	[0..1]	[174..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVHVIGQI IGATGFSESS LFCKWGIHTG AAWKLLSGVR EGQTQVDTPQ IGDMAYWSHP  60
   61 IDLHFATKGL QGWPRLHLQV WSQDSFGRCQ LAGYGFCHVP SSPGTHQLDC PTWRPLGSWR 120
  121 EQLARAFVGG GPQLLHADTI YSGADRYRLH TAAGGTVHLG IGLLLRHFDR YGVEC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2dmhA
Description:	No description for 2dmhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits