YRC Public Data Repository - Protein Structure Prediction

Protein:	PPLA_MOUSE
Organism:	Mus musculus
Length:	52 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPLA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|68395792, gi\|... - gi\|68395794\|ref\|XP_706728.1\| PREDICTED: similar to phospholamban isoform 2 [Danio rerio], gi\|6839579...	55.0	[0..1]	[36..1]
IPI:IPI00700845.... - Tax_Id=9913 6 kDa protein, Isoform of A4IFH6, Cardiac phospholamban OS=Bos taurus GN=PLN PE=3 SV=1 PPLA_PIG - Cardiac phospholamban OS=Sus scrofa GN=PLN PE=1 SV=1 gi\|164044 - gi\|164044\|gb\|AAA30884.1\| cardiac phospholamban gi\|164046 - gi\|164046\|gb\|AAC41618.1\| cardiac phospholamban (EC 2.7..1.37) gi\|108374 - pir\|\|S05540 phospholamban - pig PPLA_CANLF - Cardiac phospholamban OS=Canis lupus familiaris GN=PLN PE=1 SV=1	51.0	[0..1]	[52..1]
PLN - phospholamban gi\|123991820, gi... - gi\|208968653\|dbj\|BAG74165.1\| phospholamban [synthetic construct], gi\|123999126\|gb\|ABM87145.1\| phosph...	49.0	[0..1]	[52..1]
gi\|38492528 - gi\|38492528\|pdb\|1N7L\|A Chain A, Solution Nmr Structure Of Phospholamban In Detergent Micelles gi\|240104229 - gi\|240104229\|pdb\|2KB7\|P Chain P, Hybrid Solution And Solid-State Nmr Structure Of Monomeric Phosphol...	49.0	[0..1]	[52..2]
gi\|47226825 - gi\|47226825\|emb\|CAG06667.1\| unnamed protein product [Tetraodon nigroviridis]	48.0	[0..1]	[36..1]
PPLA_CHICK - Cardiac phospholamban OS=Gallus gallus GN=PLN PE=2 SV=1	47.0	[0..1]	[52..1]

Back

Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVQYLTRS AIRRASTIEM PQQARQNLQN LFINFCLILI CLLLICIIVM LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	1zllA
Description:	NMR Structure of Unphosphorylated Human Phospholamban Pentamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits