YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEF1_MOUSE
Organism:	Mus musculus
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEF1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73991903 - gi\|73991903\|ref\|XP_542915.2\| PREDICTED: similar to Protein C20orf28 homolog [Canis familiaris]	295.0	[0..1]	[234..1]
SPEF1_BOVIN - Sperm flagellar protein 1 OS=Bos taurus GN=SPEF1 PE=2 SV=1	285.0	[0..1]	[234..1]
SPEF1 - sperm flagellar 1	284.0	[0..1]	[234..1]
gi\|114680691 - gi\|114680691\|ref\|XP_001161874.1\| PREDICTED: hypothetical protein [Pan troglodytes]	283.0	[0..1]	[234..1]
gi\|109092738 - gi\|109092738\|ref\|XP_001115387.1\| PREDICTED: similar to Sperm flagellar protein 1 [Macaca mulatta]	282.0	[0..1]	[234..1]
gi\|41056109, gi\|... - gi\|41056109\|ref\|NP_956821.1\| calponin-homology and microtubule-associated protein [Danio rerio], gi\|...	246.0	[0..5]	[228..7]
gi\|220944768, gi... - gi\|220954554\|gb\|ACL89820.1\| CG16719-PA [synthetic construct], gi\|220944768\|gb\|ACL84927.1\| CG16719-PA... CG16719-PA - This gene is referred to in FlyBase by the symbol Dmel\CG16719 (CG16719, FBgn0036029). It is a prote...	231.0	[0..5]	[231..1]
gi\|109459571, gi... - gi\|109463133\|ref\|XP_001059012.1\| PREDICTED: similar to Sperm flagellar protein 1 [Rattus norvegicus]...	225.0	[0..10]	[224..19]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSVDEEAL HQLYLWVDNI PLSRPKRNLS RDFSDGVLVA ELIKFYFPKM VEMHNYVPAN  60
   61 SLQQKLSNWG HLNRKVLNKL NFSVPDDVMR KIAQCSPGVV ELVLIPLRQR LEERQRRQKL 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	2ee7A
Description:	No description for 2ee7A was found.

Predicted Domain #2

Region A:
Residues: [122-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGSLQELAPQ DSSGYMDMGL PQKVRGEGAP ALGEQLREGR PLASRPPGYN QALQGDPSFV  60
   61 LQIAEKEQEL LASQETVQVL QMKVKRLEHL LQLKNVRIDD LSRRLQQAER KQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits