YRC Public Data Repository - Protein Structure Prediction

Protein:	CXL13_MOUSE
Organism:	Mus musculus
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CXL13_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	109.0	[0..2]	[97..4]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	109.0	[0..2]	[99..4]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	108.0	[0..2]	[98..12]
gi\|21070221, gi\|... - gi\|21070221\|gb\|AAM34214.1\|AF506972_1 mcp-2 [Equus caballus], gi\|126352332\|ref\|NP_001075333.1\| mcp-2 ...	106.0	[0..1]	[99..1]
CCL3_PANTR - C-C motif chemokine 3 OS=Pan troglodytes GN=CCL3 PE=3 SV=1	106.0	[0..1]	[94..1]
CCL3L1, CCL3L3 - chemokine (C-C motif) ligand 3-like 3, chemokine (C-C motif) ligand 3-like 1	105.0	[0..1]	[94..1]
gi\|30584489, gi\|... - gi\|60653245\|gb\|AAX29317.1\| chemokine (C-C motif) ligand 3-like 1 [synthetic construct], gi\|60653243\|...	105.0	[0..1]	[91..1]
gi\|74198942, gi\|... - gi\|74198942\|dbj\|BAE30690.1\| unnamed protein product [Mus musculus], gi\|74142494\|dbj\|BAE31998.1\| unna...	105.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSTATLLL LLASCLSPGH GILEAHYTNL KCRCSGVIST VVGLNIIDRI QVTPPGNGCP  60
   61 KTEVVIWTKM KKVICVNPRA KWLQRLLRHV QSKSLSSTPQ APVSKRRAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1j8iA
Description:	Lymphotactin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits