YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG5_MOUSE
Organism:	Mus musculus
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73973666 - gi\|73973666\|ref\|XP_854294.1\| PREDICTED: similar to Autophagy protein 5-like (APG5-like) (Apoptosis-s...	473.0	[0..1]	[275..1]
ATG5 - ATG5 autophagy related 5 homolog (S. cerevisiae) gi\|55627156, gi\|... - gi\|55627156\|ref\|XP_518659.1\| PREDICTED: hypothetical protein LOC462905 isoform 4 [Pan troglodytes], ... gi\|109072199, gi... - gi\|109072201\|ref\|XP_001088300.1\| PREDICTED: APG5 autophagy 5-like isoform 4 [Macaca mulatta], gi\|109...	473.0	[0..1]	[275..1]
ATG5_PONPY - Autophagy protein 5 - Pongo pygmaeus (Orangutan) ATG5_PONAB - Autophagy protein 5 OS=Pongo abelii GN=ATG5 PE=2 SV=1	471.0	[0..1]	[275..1]
ATG5_BOVIN - Autophagy protein 5 OS=Bos taurus GN=ATG5 PE=2 SV=2	469.0	[0..1]	[275..1]
ATG5_RAT - Autophagy protein 5 OS=Rattus norvegicus GN=Atg5 PE=2 SV=1	468.0	[0..1]	[275..1]
ATG5_PIG - Autophagy protein 5 OS=Sus scrofa GN=ATG5 PE=2 SV=1	459.0	[0..1]	[275..1]
gi\|57530282, gi\|... - gi\|57530282\|ref\|NP_001006409.1\| APG5 autophagy 5-like [Gallus gallus], gi\|53136704\|emb\|CAG32681.1\| h...	450.0	[0..1]	[275..1]
gi\|57863778, gi\|... - gi\|57863778\|ref\|NP_001009914.1\| APG5 autophagy 5-like protein isoform 1 [Danio rerio], gi\|50418509\|g...	435.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDDKDVLRD VWFGRIPTCF TLYQDEITER EAEPYYLLLP RVSYLTLVTD KVKKHFQKVM  60
   61 RQEDVSEIWF EYEGTPLKWH YPIGLLFDLL ASSSALPWNI TVHFKSFPEK DLLHCPSKDA 120
  121 VEAHFMSCMK EADALKHKSQ VINEMQKKDH KQLWMGLQND RFDQFWAINR KLMEYPPEEN 180
  181 GFRYIPFRIY QTTTERPFIQ KLFRPVAADG QLHTLGDLLR EVCPSAVAPE DGEKRSQVMI 240
  241 HGIEPMLETP LQWLSEHLSY PDNFLHISIV PQPTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	2dymA
Description:	No description for 2dymA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits