YRC Public Data Repository - Protein Structure Prediction

Protein:	NEUL3_MOUSE
Organism:	Mus musculus
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEUL3_MOUSE.

Description	E-value	Query Range	Subject Range
NEUL3_RAT - E3 ubiquitin-protein ligase NEURL3 OS=Rattus norvegicus GN=Neurl3 PE=2 SV=1	208.0	[0..1]	[254..1]
gi\|73980785 - gi\|73980785\|ref\|XP_854419.1\| PREDICTED: similar to lung-inducible neuralized-related C3HC4 RING doma...	176.0	[0..7]	[249..49]
gi\|76628626 - gi\|76628626\|ref\|XP_588706.2\| PREDICTED: similar to lung inducible neuralized-related C3HC4 RING fing...	172.0	[0..1]	[242..8]
gi\|114578908 - gi\|114578908\|ref\|XP_525820.2\| PREDICTED: similar to lung inducible neuralized-related C3HC4 RING fin...	161.0	[0..1]	[240..1]
gi\|172045848, gi... - gi\|88956627\|ref\|XP_944592.1\| PREDICTED: similar to lung-inducible neuralized-related C3HC4 RING doma...	157.0	[0..1]	[254..1]
gi\|109103874 - gi\|109103874\|ref\|XP_001098790.1\| PREDICTED: similar to lung-inducible neuralized-related C3HC4 RING ...	155.0	[0..1]	[254..1]
gi\|26334079 - gi\|26334079\|dbj\|BAC30757.1\| unnamed protein product [Mus musculus]	154.0	[0..1]	[163..24]
neur-PC, neur-PE - The gene neuralized is referred to in FlyBase by the symbol Dmel\neur (CG11988, FBgn0002932). It is ... gi\|220951864 - gi\|220951864\|gb\|ACL88475.1\| neur-PC [synthetic construct]	149.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLLSPEAN AEVPREALSF HGNATGAQVH LDDQRSTARR RSTFHDGIVF SQRPVWPGER  60
   61 VALRVLRHEE GWCGGLRVGF TRLDPAQVAA SCLPPFVCPD LEEQSPTWAA LLPEGFVRAG 120
  121 NVVCFWVNRR GWLFAKVNAG RPLLLRKDVL VQGAPLWAVM DVYGTTKAIE LLDPKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2yueA
Description:	No description for 2yueA was found.

Predicted Domain #2

Region A:
Residues: [177-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAWIRSGEPV PESEVISGEE CVICFHNTAN TRLMPCGHSH FCGSCAWHIF KDTARCPICR  60
   61 WQIEEVAVVS SLKAEEGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1fbvA
Description:	Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits