YRC Public Data Repository - Protein Structure Prediction

Protein:	DERL2_MOUSE
Organism:	Mus musculus
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DERL2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	313.0	[0..1]	[239..122]
gi\|114665974 - gi\|114665974\|ref\|XP_511992.2\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] ENSCJAT00000022013 - null gi\|168278134 - gi\|168278134\|dbj\|BAG11045.1\| derlin-2 [synthetic construct] gi\|109112945 - gi\|109112945\|ref\|XP_001101490.1\| PREDICTED: similar to Der1-like domain family, member 2 [Macaca mul... DERL2 - Der1-like domain family, member 2 gi\|73955289 - gi\|73955289\|ref\|XP_848354.1\| PREDICTED: similar to Der1-like domain family, member 2 isoform 1 [Cani... tr\|G1SMK6\|G1SMK6... - pep:novel chromosome:oryCun2:19:12909437:12922849:-1 gene:ENSOCUG00000004811 transcript:ENSOCUT00000... gi\|194675605 - gi\|194675605\|ref\|XP_001789969.1\| PREDICTED: Der1-like domain family, member 2 [Bos taurus] DERL2_PONAB - Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 DERL2_PONPY - Derlin-2 - Pongo pygmaeus (Orangutan)	275.0	[0..1]	[239..1]
gi\|16151831 - gi\|16151831\|gb\|AAL14868.1\|AF208064_1 F-LANa [Mus musculus]	273.0	[0..1]	[239..1]
gi\|66267283, gi\|... - gi\|66773149\|ref\|NP_001019566.1\| Der1-like domain family, member 2 [Danio rerio], gi\|66267283\|gb\|AAH9...	272.0	[0..1]	[239..1]
gi\|89269041, gi\|... - gi\|89269041\|emb\|CAJ81565.1\| Der1-like domain family, member 3derlin-3 [Xenopus tropicalis], gi\|62859...	271.0	[0..1]	[239..1]
gi\|109488353 - gi\|109488353\|ref\|XP_001079920.1\| PREDICTED: similar to Der1-like domain family, member 2 [Rattus nor...	271.0	[0..1]	[239..1]
gi\|114665972 - gi\|114665972\|ref\|XP_001166612.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	271.0	[0..1]	[239..1]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	265.0	[0..1]	[236..1]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	263.0	[0..5]	[236..3]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQSLRLEY LQIPPVSRAY TTACVLTTAA VQLELITPFQ LYFNPELIFK HFQIWRLITN  60
   61 FLFFGPVGFN FLFNMIFLYR YCRMLEEGSF RGRTADFVFM FLFGGFLMTL FGLFVSLVFL 120
  121 GQAFTIMLVY VWSRRNPYVR MNFFGLLNFQ APFLPWVLMG FSLLLGNSII VDLLGIAVGH 180
  181 IYFFLEDIFP NQPGGIRILK TPSILRTIFD TPDEDPNYNP LPEERPGGFA WGEGQRLGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	2ic8A
Description:	No description for 2ic8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits