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View Structure Prediction Details

Protein: CKLF4_MOUSE
Organism: Mus musculus
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKLF4_MOUSE.

Description E-value Query
Range
Subject
Range
gi|114662992 - gi|114662992|ref|XP_523385.2| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...
261.0 [0..1] [208..1]
CMTM4 - CKLF-like MARVEL transmembrane domain containing 4
260.0 [0..1] [208..1]
gi|109507708, gi... - ref|XP_344718.1| similar to chemokine-like factor super family 4 [Rattus norvegicus], gi|109507708|r...
252.0 [0..1] [208..1]
gi|50540046, gi|... - gi|50540046|ref|NP_001002492.1| CKLF-like MARVEL transmembrane domain containing 4 [Danio rerio], gi...
187.0 [0..1] [204..1]
gi|47230522 - gi|47230522|emb|CAF99715.1| unnamed protein product [Tetraodon nigroviridis]
185.0 [0..1] [203..1]
gi|109128848 - gi|109128848|ref|XP_001084352.1| PREDICTED: similar to chemokine-like factor superfamily 4 isoform 1...
180.0 [0..62] [208..57]
gi|76640772 - gi|76640772|ref|XP_592654.2| PREDICTED: similar to chemokine-like factor super family 4 [Bos taurus]
179.0 [0..63] [208..43]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGEELDGF EGEASSTSMI SGASSPYQPT TEPVSQRRGL AGLRCDPDYL RGALGRLKVA  60
   61 QVILALIAFI CIETIMECSP CEGLYFFEFV SCSAFVVTGV LLILFSLNLH MRIPQINWNL 120
  121 TDLVNTGLST FFFFIASIVL AALNHKTGAE IAAVIFGFLA TAAYAVSTFL AMQKWRVSVR 180
  181 QQSTNDYIRA RTESRDVDSR PEIQRLDT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.721246
Match: PF01284.14
Description: No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle