YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGF_MOUSE
Organism:	Mus musculus
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGF_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74222740, gi\|... - gi\|74222740\|dbj\|BAE42236.1\| unnamed protein product [Mus musculus], gi\|22135636\|gb\|AAH28862.1\| Phosp...	315.0	[0..1]	[219..1]
gi\|114577255, gi... - gi\|114577257\|ref\|XP_001148023.1\| PREDICTED: phosphatidylinositol glycan, class F isoform 3 [Pan trog...	313.0	[0..1]	[219..1]
gi\|123984437, gi... - gi\|123998401\|gb\|ABM86802.1\| phosphatidylinositol glycan anchor biosynthesis, class F [synthetic cons... PIGF - phosphatidylinositol glycan anchor biosynthesis, class F	311.0	[0..1]	[219..1]
gi\|109102846 - gi\|109102846\|ref\|XP_001113130.1\| PREDICTED: similar to phosphatidylinositol glycan, class F isoform ...	308.0	[0..1]	[219..1]
gi\|73969534 - gi\|73969534\|ref\|XP_531809.2\| PREDICTED: similar to phosphatidylinositol glycan, class F isoform 1 is...	302.0	[0..1]	[219..1]
gi\|116004365, gi... - gi\|83405738\|gb\|AAI11282.1\| Phosphatidylinositol glycan anchor biosynthesis, class F [Bos taurus], gi...	286.0	[0..1]	[219..1]
gi\|45387713, gi\|... - gi\|45387713\|ref\|NP_991208.1\| phosphatidylinositol glycan anchor biosynthesis, class F [Danio rerio],...	273.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDTDIKRLL YTNLLCVFSI FLSIFIPSFF VDNFSVLEAH LTWLCICSAS VTTVNLLSYL  60
   61 VV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPNVSSKRSS LSHKVTRALK CCVCFLMSCF LLHIIFVLYG APLIELVLET FLFAVVLSTF  60
   61 TTVPCLCLLG PNLKAWLRVF SRNGVTSIWE NSLQITTISS FTGAWLGAFP IPLDWERPWQ 120
  121 VWPISCTLGA TFGYVAGLVI SPLWIYWNRK QLTYKNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits