YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTP_MOUSE
Organism:	Mus musculus
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109497489 - gi\|109497489\|ref\|XP_001080376.1\| PREDICTED: similar to Glycolipid transfer protein (GLTP) [Rattus no...	306.0	[0..1]	[209..130]
gi\|74178805 - gi\|74178805\|dbj\|BAE34045.1\| unnamed protein product [Mus musculus]	293.0	[0..1]	[209..1]
gi\|109099519 - gi\|109099519\|ref\|XP_001089145.1\| PREDICTED: glycolipid transfer protein isoform 2 [Macaca mulatta] GLTP_PANTR - Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1 GLTP - glycolipid transfer protein CCDS9136.1_1 - null ENSCJAT00000018919 - null	290.0	[0..1]	[209..1]
gi\|75765252 - gi\|75765252\|pdb\|1TFJ\|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In Complex W...	289.0	[0..2]	[209..12]
gi\|73995333 - gi\|73995333\|ref\|XP_854394.1\| PREDICTED: similar to Glycolipid transfer protein (GLTP) [Canis familia...	289.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLAEHLLK PLPADRQIET GPFLEAVAHL PPFFDCLGSP VFTPIKADIS GNITKIKAVY  60
   61 DTDPAKFKTL QNILEVEKGM YGAEWPKVGA TLALLWLKRG LRFIQVFLQS ICDGERDENH 120
  121 PNLIRVNANK AYEMALKKYH GWLVQKIFKA ALYAAPYKSD FLKALSKGQN VTEEECLEKI 180
  181 RLFLVNYTAT IDAIYDMYTK MNAELDYTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	1swxA
Description:	Crystal structure of a human glycolipid transfer protein in apo-form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits