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View Structure Prediction Details

Protein: HXA7_MOUSE
Organism: Mus musculus
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HXA7_MOUSE.

Description E-value Query
Range
Subject
Range
gi|158711670, gi... - gi|62647267|ref|XP_575478.1| PREDICTED: similar to Hoxa7 [Rattus norvegicus], gi|158711670|ref|NP_00...
173.0 [0..1] [214..1]
gi|309313, gi|90643 - pir||A28329 homeotic protein Hox A7 - mouse, gi|309313|gb|AAA37833.1| hox-1.1 peptide
172.0 [0..1] [214..1]
gi|76615429 - gi|76615429|ref|XP_872865.1| PREDICTED: similar to homeobox A7 [Bos taurus]
167.0 [0..1] [189..1]
gi|6918885 - gi|6918885|emb|CAA59270.1| HOX 1.1 (A7) [Homo sapiens]
165.0 [0..1] [192..1]
gi|73976169 - gi|73976169|ref|XP_864646.1| PREDICTED: similar to homeobox protein A7 isoform 3 [Canis familiaris]
160.0 [0..1] [191..1]
gi|114612543 - gi|114612543|ref|XP_001162845.1| PREDICTED: homeobox A7 [Pan troglodytes]
160.0 [0..1] [201..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSYYVNAL FSKYTAGASL FQNAEPTSCS FAPNSQRSGY GPGAGAFAST VPGLYNVNSP  60
   61 LYQSPFASGY GLGADAYNLP CASYDQNIPG LCSDLAKGAC DKADEGVLHG PAEASFRIYP 120
  121 WMRSSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDRKRGRQTY TRYQTLELEK EFHFNRYLTR RRRIEIAHAL CLTERQIKIW FQNRRMKWKK  60
   61 EHKDESQAPT AAPEDAVPSV STAADKADEE EEEEEEEEEE EEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.154902
Match: 1homA
Description: DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle