YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148706930, gi...
Organism:	Mus musculus
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148706930, gi....

Description	E-value	Query Range	Subject Range
gi\|88943485 - gi\|88943485\|ref\|XP_497711.2\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]	254.0	[0..44]	[181..43]
gi\|76612880 - gi\|76612880\|ref\|XP_871849.1\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Bos taurus]	248.0	[0..34]	[181..195]
gi\|50729226 - gi\|50729226\|ref\|XP_425464.1\| PREDICTED: similar to histone protein Hist2h3c1 [Gallus gallus]	241.0	[0..44]	[181..62]
gi\|109508757, gi... - gi\|109508757\|ref\|XP_001075226.1\| PREDICTED: similar to H3 histone, family 3B [Rattus norvegicus], gi...	238.0	[0..47]	[181..18]
gi\|74004258 - gi\|74004258\|ref\|XP_854287.1\| PREDICTED: similar to histone 1, H2ai (predicted) [Canis familiaris]	237.0	[0..37]	[181..12]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQRGSFKS LSPPRRGEDC AYKGGRLGPV SGPRVLLVWV SSVFAMARTK QTARKSTGGK  60
   61 APRKQLATKA ARKSAPATGG VKKPHRYRPG TVALREIRRY QKSTELLIRK LPFQRLVREI 120
  121 AQDFKTDLRF QSSAVMALQE ASEAYLVGLF EDTNLCAIHA KRVTIMPKDI QLARRIRGER 180
  181 A

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Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	1u35A
Description:	Crystal structure of the nucleosome core particle containing the histone domain of macroH2A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits