YRC Public Data Repository - Protein Structure Prediction

Protein:	TMM56_MOUSE
Organism:	Mus musculus
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMM56_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|116193995, gi... - gi\|88182628\|gb\|EAQ90096.1\| hypothetical protein CHGG_06715 [Chaetomium globosum CBS 148.51], gi\|1161...	207.0	[0..23]	[276..285]
gi\|85116500 - gi\|85116500\|ref\|XP_965062.1\| hypothetical protein NCU02468 [Neurospora crassa OR74A] gi\|28926864, gi\|... - gi\|38567119\|emb\|CAE76415.1\| related to protein LAC1 [Neurospora crassa], gi\|32422447\|ref\|XP_331667.1...	206.0	[0..24]	[272..144]
gi\|109016494 - gi\|109016494\|ref\|XP_001106777.1\| PREDICTED: similar to LAG1 longevity assurance homolog 2 isoform 1 ...	196.0	[0..39]	[269..389]
gi\|39940102, gi\|... - gi\|39940102\|ref\|XP_359588.1\| hypothetical protein MGG_05189 [Magnaporthe grisea 70-15], gb\|EAA52497....	196.0	[0..20]	[276..139]
gi\|42554572, gi\|... - gi\|46135815\|ref\|XP_389599.1\| hypothetical protein FG09423.1 [Gibberella zeae PH-1], gi\|42554572\|gb\|E...	193.0	[0..24]	[270..167]
CERS4_MOUSE - Ceramide synthase 4 OS=Mus musculus GN=Cers4 PE=1 SV=1	190.0	[0..24]	[275..101]
gi\|109494930, gi... - gi\|157819977\|ref\|NP_001100587.1\| LAG1 homolog, ceramide synthase 4 [Rattus norvegicus], gi\|149015624...	189.0	[0..24]	[275..101]
lag1 - sphingosine N-acyltransferase Lag1 LAG1_SCHPO - Sphingosine N-acyltransferase lag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lag1 PE...	184.0	[0..23]	[276..116]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASTKAAVG SGAMEASTKA VICTVCSSFV VFQILFHFVS YWFSARVSSG YNSLSIDKKI  60
   61 EWNSRVVSTC HSLLVGIFGL YLFFFDEATI TDPLWGDPTY VNINIATASG YLISDLLIIL 120
  121 FNWKVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDKFFIIHHC AGLTAYYFVL TTGALAYIAN FRLLAELSSP FVNQRWFFEA LKYPKFSKAN  60
   61 VINGILMTVV FFIVRIISIP PMYFFLYSVY GTEPYIRFGF VIQSVWIVTC VILDVMNIMW 120
  121 MIKITKGCIK VISLIRQEKA KDSLQNGKLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits