YRC Public Data Repository - Protein Structure Prediction

Protein:	WFDC1_MOUSE
Organism:	Mus musculus
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WFDC1_MOUSE.

Description	E-value	Query Range	Subject Range
WFDC1_CHICK - WAP four-disulfide core domain protein 1 OS=Gallus gallus GN=WFDC1 PE=2 SV=1	273.0	[0..4]	[210..12]
WFDC1_RAT - WAP four-disulfide core domain protein 1 OS=Rattus norvegicus GN=Wfdc1 PE=1 SV=1	259.0	[0..1]	[211..1]
gi\|119615892, gi... - gi\|119615893\|gb\|EAW95487.1\| WAP four-disulfide core domain 1, isoform CRA_a [Homo sapiens], gi\|11961...	259.0	[0..2]	[210..9]
gi\|114663886 - gi\|114663886\|ref\|XP_511141.2\| PREDICTED: WAP four-disulfide core domain 1 [Pan troglodytes]	258.0	[0..2]	[210..9]
gi\|148679664, gi... - gi\|19484224\|gb\|AAH25850.1\| Wfdc1 protein [Mus musculus], gi\|148679664\|gb\|EDL11611.1\| WAP four-disulf...	257.0	[0..4]	[211..1]
gi\|76640009 - gi\|76640009\|ref\|XP_581642.2\| PREDICTED: similar to prostate stromal protein ps20 [Bos taurus]	248.0	[0..1]	[210..70]
gi\|68389317 - gi\|68389317\|ref\|XP_689351.1\| PREDICTED: similar to PS20 protein [Danio rerio]	217.0	[0..49]	[210..51]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCGRKVLR ALSFLLLLGS SSAQGTWEAM LPARLAEKSR AEEVAATGSR QPHADRCPPP  60
   61 PRTLPPGACQ ATRCQADSEC PRHRRCCYNG CAYACLEAVP PPPVLDWLVQ PKPRWLGGNG 120
  121 WLLDGPEEVL QAETCSTTED GAEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1zlgA
Description:	No description for 1zlgA was found.

Predicted Domain #2

Region A:
Residues: [145-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLCPSGYECH ILQPGDEAQG IPNHGQCVKQ RRQAEGRVLR QRLHKEYPEG DSKNVAEPGK  60
   61 GQQRHFP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits