YRC Public Data Repository - Protein Structure Prediction

Protein:	CKLF7_MOUSE
Organism:	Mus musculus
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKLF7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109508347 - gi\|109508347\|ref\|XP_001057152.1\| PREDICTED: similar to chemokine-like factor super family 4 [Rattus ...	153.0	[0..6]	[164..52]
gi\|74212127 - gi\|74212127\|dbj\|BAE40226.1\| unnamed protein product [Mus musculus]	151.0	[0..1]	[167..1]
gi\|114662992 - gi\|114662992\|ref\|XP_523385.2\| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...	151.0	[0..6]	[164..12]
CMTM4 - CKLF-like MARVEL transmembrane domain containing 4	151.0	[0..6]	[164..12]
gi\|109052638 - gi\|109052638\|ref\|XP_001097925.1\| PREDICTED: similar to CKLF-like MARVEL transmembrane domain contain...	143.0	[0..1]	[166..1]
gi\|73990377 - gi\|73990377\|ref\|XP_852137.1\| PREDICTED: similar to chemokine-like factor superfamily 7 isoform a [Ca...	142.0	[0..24]	[166..52]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGSGLVRT TCSSGGALGP GQPSEGLLDR VYPLTHGALF KVAQMVTLLI AFICVRSSVP  60
   61 IDYGAHSFFE VVTMCDLIMI LIFYLVHLFR FYRVLTCISW PLSELLHYLI GTLLLLIASI 120
  121 VIASKSYNQS GLVAGAIFGF LASFLCLASL WLSYKITCIT QSSDASA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.886057
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits