YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21707747, gi\|...
Organism:	Mus musculus
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21707747, gi|....

Description	E-value	Query Range	Subject Range
gi\|12850553 - gi\|12850553\|dbj\|BAB28768.1\| unnamed protein product [Mus musculus]	406.0	[0..1]	[244..1]
TIM21_RAT - Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV...	394.0	[0..1]	[244..1]
gi\|114673558 - gi\|114673558\|ref\|XP_512174.2\| PREDICTED: similar to C18orf55 protein isoform 2 [Pan troglodytes]	354.0	[0..1]	[242..1]
gi\|123980464, gi... - gi\|123995277\|gb\|ABM85240.1\| chromosome 18 open reading frame 55 [synthetic construct], gi\|123980464\|... C18orf55 - chromosome 18 open reading frame 55	353.0	[0..1]	[242..1]
gi\|109122476 - gi\|109122476\|ref\|XP_001083249.1\| PREDICTED: similar to TIM21-like protein, mitochondrial precursor [...	348.0	[0..1]	[242..1]
TIM21_BOVIN - Mitochondrial import inner membrane translocase subunit Tim21 OS=Bos taurus GN=TIMM21 PE=2 SV=1	311.0	[0..1]	[241..1]
gi\|73945390 - gi\|73945390\|ref\|XP_848564.1\| PREDICTED: similar to CG7382-PA isoform 2 [Canis familiaris]	311.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICAFLRVVQ HAEKLHGSLG RQLLPHFVFT KACFKTQPLR WGLREQKITV QPRTVLRFTQ  60
   61 KTFWTQGPDP RKAKEDSTKQ VSIRRNQREE TGVSMSQKVR EAGRDVSYLI VVLFGVGLTG 120
  121 GLLYAIFKEL F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSSSPNIIYG KALGKCRTHP EVIGVFGEPL KGYGEMSRRG RRQHVRFSEY VNNGLKRIRV  60
   61 KFYIEGSEPG KQGTVHAEVE ENPGSGQFEF RYIFVEVTPT RSIIVEDNRS EQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits