YRC Public Data Repository - Protein Structure Prediction

Protein:	CKLF8_MOUSE
Organism:	Mus musculus
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKLF8_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50732788 - gi\|50732788\|ref\|XP_418764.1\| PREDICTED: similar to chemokine-like factor superfamily 8 [Gallus gallu...	162.0	[0..24]	[173..317]
gi\|57103824 - gi\|57103824\|ref\|XP_542744.1\| PREDICTED: similar to chemokine-like factor superfamily 8 [Canis famili...	161.0	[0..1]	[173..1]
gi\|109052632 - gi\|109052632\|ref\|XP_001097523.1\| PREDICTED: similar to CKLF-like MARVEL transmembrane domain contain...	161.0	[0..1]	[173..1]
gi\|109508347 - gi\|109508347\|ref\|XP_001057152.1\| PREDICTED: similar to chemokine-like factor super family 4 [Rattus ...	160.0	[0..7]	[173..54]
CKLF4_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 4 OS=Mus musculus GN=Cmtm4 PE=1 SV=1	159.0	[0..7]	[173..14]
CMTM8 - CKLF-like MARVEL transmembrane domain containing 8	159.0	[0..1]	[173..1]
gi\|114662992 - gi\|114662992\|ref\|XP_523385.2\| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...	159.0	[0..7]	[173..14]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQQRARSH TVTTTTSSFA ENFSTTSSSF AYDREFLRTP PGLLIVAEIV LGLLVWTLIA  60
   61 GTEYFRVPAF GWVMFVAVFY WVLTVFFLIV YITLTYTRIP QVPWTTVGLC FNGSAFVLYF 120
  121 SAAIVDASSV SPEKEGHNFN SWAASSFFAF LVTICYAGNT YFSFIAWRSR TAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.920819
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits