YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12839776, gi\|...
Organism:	Mus musculus
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12839776, gi|....

Description	E-value	Query Range	Subject Range
FUNDC2 - FUN14 domain containing 2 HGNC:24925\|Ensem... - domain containing 2 gi\|117645278, gi... - gi\|117645892\|emb\|CAL38413.1\| hypothetical protein [synthetic construct], gi\|117645278\|emb\|CAL38105.1...	268.0	[0..6]	[171..10]
gi\|114599711 - gi\|114599711\|ref\|XP_001152563.1\| PREDICTED: similar to hepatitis C virus core-binding protein 6 [Pan...	264.0	[0..2]	[171..6]
FUND2_MACMU - FUN14 domain-containing protein 2 OS=Macaca mulatta GN=FUNDC2 PE=2 SV=1	263.0	[0..6]	[171..10]
gi\|26345818 - gi\|26345818\|dbj\|BAC36560.1\| unnamed protein product [Mus musculus]	259.0	[0..13]	[171..13]
FUND2_PIG - FUN14 domain-containing protein 2 OS=Sus scrofa GN=FUNDC2 PE=2 SV=1	259.0	[0..2]	[171..5]
FUND2_BOVIN - FUN14 domain-containing protein 2 OS=Bos taurus GN=FUNDC2 PE=2 SV=1	255.0	[0..3]	[171..8]
gi\|75677600 - gi\|75677600\|ref\|NP_001028684.1\| FUN14 domain containing 2 [Canis lupus familiaris]	250.0	[0..6]	[171..10]
gi\|55727731\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55727731 - gi\|55727731\|emb\|CAH90616.1\| hypothetical protein [Pongo abelii]	232.0	[0..30]	[171..1]
gi\|33090009 - gi\|33090009\|gb\|AAP93875.1\| HCBP6 [Rattus norvegicus]	227.0	[0..35]	[171..1]

Back

Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNTSTTTT ATVARSISSF TDPHHFPSHN HIIRMASASQ GHFDAYEALD LTEFAKKQPW  60
   61 WRKLFGQESR SAGEKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.509	N/A	N/A	a.64.1	Saposin
View	Download	0.427	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.410	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.403	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.393	N/A	N/A	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [77-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVATQLLIGG VTGWCTGFIF QKVGKLAATA VGGGFFLLQL ANHTGYIKVD WSRVEKDMKK  60
   61 AKEQLTIRKS AQIPTEVKSK AEEVVCFVKK NVLVTGGFFG GFLLGMAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.327902
Match:	PF04930.6
Description:	No description for PF04930.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.713	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.507	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.503	N/A	N/A	d.56.1	GroEL-intermediate domain like
View	Download	0.463	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.451	N/A	N/A	a.7.4	Smac/diablo

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits