YRC Public Data Repository - Protein Structure Prediction

Protein:	TPPC4_MOUSE
Organism:	Mus musculus
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPC4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|71051670, gi\|... - gi\|71051670\|gb\|AAH98628.1\| Trafficking protein particle complex 4 [Rattus norvegicus], gi\|62653423\|r... tr\|G3I977\|G3I977... - Trafficking protein particle complex subunit 4 OS=Cricetulus griseus GN=H671_4g12993 PE=4 SV=1	324.0	[0..1]	[219..1]
gi\|55637071 - gi\|55637071\|ref\|XP_508802.1\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S... TPPC4_PONPY - Trafficking protein particle complex subunit 4 - Pongo pygmaeus (Orangutan) TPPC4_PONAB - Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 TRAPPC4 - trafficking protein particle complex 4	321.0	[0..1]	[219..1]
tr\|M3VW28\|M3VW28... - Trafficking protein particle complex 4 OS=Felis catus GN=TRAPPC4 PE=4 SV=1 gi\|149716953 - gi\|149716953\|ref\|XP_001503119.1\| PREDICTED: similar to Trafficking protein particle complex 4 [Equus... TPPC4_BOVIN - Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1	319.0	[0..1]	[219..1]
gi\|73954670 - gi\|73954670\|ref\|XP_536548.2\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S...	315.0	[0..1]	[219..1]
gi\|77748155, gi\|... - gi\|77748155\|gb\|AAI06501.1\| MGC131237 protein [Xenopus laevis], gi\|148223700\|ref\|NP_001090112.1\| hypo...	305.0	[0..1]	[219..1]
gi\|37748039, gi\|... - gi\|41152142\|ref\|NP_957058.1\| trafficking protein particle complex 4 [Danio rerio], gi\|37748039\|gb\|AA...	305.0	[0..1]	[219..1]
gi\|53136776, gi\|... - gi\|57530486\|ref\|NP_001006320.1\| trafficking protein particle complex 4 [Gallus gallus], gi\|53136776\|...	293.0	[0..1]	[219..1]
gi\|47215797 - gi\|47215797\|emb\|CAG02851.1\| unnamed protein product [Tetraodon nigroviridis]	291.0	[0..1]	[219..1]
gi\|74193296 - gi\|74193296\|dbj\|BAE43192.1\| unnamed protein product [Mus musculus]	285.0	[0..1]	[194..1]

Back

Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFSVYVVN KAGGLIYQWD SYSPRAEAEK TFSYPLDLLL KLHDERVLVA FGQRDGIRVG  60
   61 HAVLAINGMD VNGKYTADGK EVLEYLGNPA NYPVSIRFGR PRLTSNEKLM LASMFHSLFA 120
  121 IGSQLSPEQG SSGIEMLETD TFKLHCFQTL TGIKFVVLAD PRQAGIDSLL RKIYEIYSDF 180
  181 ALKNPFYSLE MPIRCELFDQ NLKLALEVAE KAGTFGPGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.0
Match:	2j3tD
Description:	No description for 2j3tD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits