YRC Public Data Repository - Protein Structure Prediction

Protein:	DSS1_MOUSE
Organism:	Mus musculus
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSS1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|60654499 - gi\|60654499\|gb\|AAX29940.1\| split hand/foot malformation ectrodactyly type 1 [synthetic construct]	7.0E-12	[1..70]	[1..70]
gi\|118085851, gi... - gi\|53133250\|emb\|CAG31976.1\| hypothetical protein [Gallus gallus], gi\|148230468\|ref\|NP_001078908.1\| s... gi\|146198719, gi... - gi\|197128289\|gb\|ACH44787.1\| putative split hand/foot deleted gene 1 [Taeniopygia guttata], gi\|197128...	4.0E-11	[1..70]	[1..70]
gi\|42550616, gi\|... - gi\|46116298\|ref\|XP_384167.1\| hypothetical protein FG03991.1 [Gibberella zeae PH-1], gi\|42550616\|gb\|E...	5.0E-11	[4..57]	[19..75]
gi\|45767825, gi\|... - gi\|45767825\|gb\|AAH67682.1\| Split hand/foot malformation (ectrodactyly) type 1 [Danio rerio], gi\|4105... gi\|47222233 - gi\|47222233\|emb\|CAG11112.1\| unnamed protein product [Tetraodon nigroviridis]	2.0E-10	[1..70]	[1..70]
gi\|89269836, gi\|... - gi\|89269836\|emb\|CAJ83830.1\| split hand/foot malformation (ectrodactyly) type 1 [Xenopus tropicalis],...	2.0E-10	[2..70]	[3..71]
gi\|73975821 - gi\|73975821\|ref\|XP_861304.1\| PREDICTED: similar to 26 proteasome complex subunit DSS1 (Deleted in sp...	3.0E-10	[1..57]	[1..57]
gi\|51593680, gi\|... - gi\|51593680\|gb\|AAH78531.1\| Shfm1 protein [Xenopus laevis], gi\|51593239\|gb\|AAH78503.1\| Shfm1 protein ...	3.0E-10	[2..70]	[3..71]
gi\|114599354 - gi\|114599354\|ref\|XP_001149101.1\| PREDICTED: hypothetical protein [Pan troglodytes]	2.0E-9	[1..64]	[1..62]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKQPVDL GLLEEDDEFE EFPAEDWAGL DEDEDAHVWE DNWDDDNVED DFSNQLRAEL  60
   61 EKHGYKMETS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.309804
Match:	PF05160.4
Description:	No description for PF05160.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits