YRC Public Data Repository - Protein Structure Prediction

Protein:	MB3L1_MOUSE
Organism:	Mus musculus
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MB3L1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50760981 - gi\|50760981\|ref\|XP_418202.1\| PREDICTED: similar to methyl-CpG binding domain protein 3 [Gallus gallu...	310.0	[0..1]	[180..353]
gi\|76622860 - gi\|76622860\|ref\|XP_873150.1\| PREDICTED: similar to methyl-CpG binding domain protein 3 [Bos taurus]	289.0	[0..1]	[180..119]
gi\|73987321 - gi\|73987321\|ref\|XP_542198.2\| PREDICTED: similar to methyl-CpG binding domain protein 3 isoform 1 [Ca...	284.0	[0..1]	[180..93]
MBD3 - methyl-CpG binding domain protein 3 gi\|55647849 - gi\|55647849\|ref\|XP_512241.1\| PREDICTED: methyl-CpG binding domain protein 3 isoform 2 [Pan troglodyt...	283.0	[0..1]	[180..74]
gi\|109122751 - gi\|109122751\|ref\|XP_001095979.1\| PREDICTED: similar to methyl-CpG binding domain protein 3 [Macaca m...	283.0	[0..1]	[180..74]
gi\|114674455 - gi\|114674455\|ref\|XP_001148653.1\| PREDICTED: methyl-CpG binding domain protein 3 isoform 1 [Pan trogl... gi\|27694450, gi\|... - gi\|45708422\|gb\|AAH09372.1\| MBD3 protein [Homo sapiens], gi\|27694450\|gb\|AAH43619.1\| MBD3 protein [Hom...	279.0	[0..1]	[180..42]
MBD3_MOUSE - Methyl-CpG-binding domain protein 3 OS=Mus musculus GN=Mbd3 PE=1 SV=1 gi\|5731992 - gi\|5731992\|gb\|AAD48909.1\|AF120995_1 methyl-CpG binding domain-containing protein 3 [Mus musculus dom... gi\|55715962 - gb\|AAH86183.1\| Unknown (protein for MGC:98642) [Xenopus laevis]	279.0	[0..1]	[180..74]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTSQRKQC DCENPSKPCL STSIPLRMSS YTFKRPVTKI TSHLGNEVRY YQWEETLEKP  60
   61 EQACWQKRLQ GLQAYSSAGE LLSTSDLAKT LKDLTSTDTV ASASDTQATS IDITSVPTLE 120
  121 SSSHLANMIP EAGPQILCKE FLVTEQDIIN QERKVKIARE RLAVALIAHK LASEMETVRG 180
  181 SRKANL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits