YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31543533, gi\|...
Organism:	Mus musculus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31543533, gi|....

Description	E-value	Query Range	Subject Range
gi\|109498406, gi... - ref\|XP_225711.2\| similar to PxF protein [Rattus norvegicus], gi\|109498406\|ref\|XP_225711.4\| PREDICTED...	404.0	[0..8]	[299..73]
PEX19_MOUSE - Peroxisomal biogenesis factor 19 OS=Mus musculus GN=Pex19 PE=1 SV=1	373.0	[0..1]	[299..1]
gi\|61369573, gi\|... - gi\|61369580\|gb\|AAX43354.1\| peroxisomal biogenesis factor 19 [synthetic construct], gi\|61369573\|gb\|AA...	371.0	[0..1]	[299..1]
PEX19 - peroxisomal biogenesis factor 19 gi\|114560653 - gi\|114560653\|ref\|XP_001171920.1\| PREDICTED: peroxisomal biogenesis factor 19 isoform 5 [Pan troglody... gi\|123995831, gi... - gi\|61359509\|gb\|AAX41729.1\| peroxisomal biogenesis factor 19 [synthetic construct], gi\|123995831\|gb\|A...	371.0	[0..1]	[299..1]
gi\|90076598 - gi\|90076598\|dbj\|BAE87979.1\| unnamed protein product [Macaca fascicularis] gi\|109017646 - gi\|109017646\|ref\|XP_001117501.1\| PREDICTED: similar to peroxisomal biogenesis factor 19 isoform 3 [M...	369.0	[0..1]	[299..1]
PEX19_PONAB - Peroxisomal biogenesis factor 19 OS=Pongo abelii GN=PEX19 PE=2 SV=1 PEX19_PONPY - Peroxisomal biogenesis factor 19 - Pongo pygmaeus (Orangutan)	365.0	[0..1]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAEEGCGV GVEDDRELEE LLESALDDFD EAKPSPEHAP TISAPDASGP QKRAPGDTAK  60
   61 DALFASQEKF FQELFDSELA SQATAEFEKA MKELAEEEPH LVEQFQKLSK AAGRVGSDAS 120
  121 SQQEFTSCLK ETLSGLAKNA TELQNSGMSE EELMKAMEGL GMDEGDGEAS ILPIMQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMQNLLSKDV LYPSLKEITE KYPEWLQSHQ DSTPPEQFEK YQQQHSVMVK ICEQFEAETP  60
   61 TDSEATQRAR FEAMLDLMQQ LQALGHPPKE LAGEMPPGLN FDLDALNLSG PPGANGEQCL 120
  121 IM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits