YRC Public Data Repository - Protein Structure Prediction

Protein:	ICAM4_MOUSE
Organism:	Mus musculus
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ICAM4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|39597744, gi\|... - gi\|39597744\|emb\|CAE68436.1\| Hypothetical protein CBG14221 [Caenorhabditis briggsae], gi\|187027749\|em... gi\|157769187 - gi\|157769187\|ref\|XP_001676414.1\| Hypothetical protein CBG14221 [Caenorhabditis briggsae AF16]	168.0	[0..8]	[262..193]
sax-3 - status:Confirmed UniProt:O44928 protein_id:AAM69080.1	167.0	[0..8]	[262..195]
gi\|91094043 - gi\|91094043\|ref\|XP_968570.1\| PREDICTED: similar to peroxidasin [Tribolium castaneum]	164.0	[0..2]	[262..288]
gi\|24371280, gi\|... - gi\|24371280\|ref\|NP_571556.1\| roundabout 1 [Danio rerio], gi\|13509385\|gb\|AAK28042.2\|AF304130_1 transm...	164.0	[0..2]	[261..186]
ROBO1_MOUSE - Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1	162.0	[0..2]	[262..185]
gi\|119589290, gi... - gi\|19743806\|ref\|NP_598334.1\| roundabout 1 isoform b [Homo sapiens], gi\|119589291\|gb\|EAW68885.1\| roun...	162.0	[0..2]	[261..185]
gi\|74001211 - gi\|74001211\|ref\|XP_544814.2\| PREDICTED: similar to roundabout 1 isoform a [Canis familiaris]	161.0	[0..2]	[261..275]
gi\|81674834 - gi\|81674834\|gb\|AAI09596.1\| ROBO2 protein [Bos taurus]	161.0	[0..2]	[261..87]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESALLLPSL LLVAAYPRGG SPQQEWMQSP PAPSVTSAPF WVRLNPELEA VPPGGSAWLN  60
   61 CSHNCPLPVH SSLRTQLRQG KIVNGSGWVS YQLLDVRAWN SKVRCVVTCA GETREATARI 120
  121 TAYKRPRSVI LEPPVLVGHK YTLRCYVTHV FPVGFLVVSL RRGGRVIYHE SLERFTGSDL 180
  181 ANVTLTYVMR AGLNDLWQPL TCHARLNLDG LVVRSSSAPV MLTVLALSPA SIALASTSIA 240
  241 TLVGILLAVG AVYVRKYLAV QT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1e07A
Description:	Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits