YRC Public Data Repository - Protein Structure Prediction

Protein:	RB27A_MOUSE
Organism:	Mus musculus
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RB27A_MOUSE.

Description	E-value	Query Range	Subject Range
RB27A_PIG - Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1	231.0	[0..1]	[221..1]
gi\|452229 - gi\|452229\|dbj\|BAA04167.1\| low Mr GTP-binding protein [Rattus sp.] RB27A_RAT - Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1	229.0	[0..1]	[221..1]
RAB27A - RAB27A, member RAS oncogene family	228.0	[0..1]	[221..1]
gi\|60835441, gi\|... - gi\|60835467\|gb\|AAX37140.1\| RAB27A member RAS oncogene family [synthetic construct], gi\|60835441\|gb\|A...	228.0	[0..1]	[221..1]
gi\|49074732, gi\|... - gi\|71019563\|ref\|XP_760012.1\| hypothetical protein UM03865.1 [Ustilago maydis 521], ref\|XP_401480.1\| ...	228.0	[0..1]	[220..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	226.0	[0..2]	[220..1]
gi\|151554931, gi... - gi\|76660702\|ref\|XP_875459.1\| PREDICTED: similar to member RAS oncogene family, RAB27A [Bos taurus], ...	226.0	[0..1]	[221..1]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	226.0	[0..2]	[219..4]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGDYDYLI KFLALGDSGV GKTSVLYQYT DGKFNSKFIT TVGIDFREKR VVYRANGPDG  60
   61 AVGRGQRIHL QLWDTAGQER FRSLTTAFFR DAMGFLLLFD LTNEQSFLNV RNWISQLQMH 120
  121 AYCENPDIVL CGNKSDLEDQ RAVKEEEARE LAEKYGIPYF ETSAANGTNI SHAIEMLLDL 180
  181 IMKRMERCVD KSWIPEGVVR SNGHTSADQL SEEKEKGLCG C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2iezA
Description:	No description for 2iezA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits