YRC Public Data Repository - Protein Structure Prediction

Protein:	ATGA1_MOUSE
Organism:	Mus musculus
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATGA1_MOUSE.

Description	E-value	Query Range	Subject Range
ATGA1_RAT - Autophagy-related protein 101 OS=Rattus norvegicus GN=Atg101 PE=2 SV=1	338.0	[0..1]	[218..1]
gi\|109096739, gi... - gi\|109096739\|ref\|XP_001091708.1\| PREDICTED: similar to CG7053-PA isoform 3 [Macaca mulatta], gi\|1090... C12orf44 - chromosome 12 open reading frame 44 gi\|114644601, gi... - gi\|114644609\|ref\|XP_001144690.1\| PREDICTED: similar to Chromosome 12 open reading frame 44 isoform 4... tr\|M3WZ79\|M3WZ79... - Autophagy related 101 OS=Felis catus GN=ATG101 PE=4 SV=1	337.0	[0..1]	[218..1]
ATGA1_BOVIN - Autophagy-related protein 101 OS=Bos taurus GN=ATG101 PE=2 SV=1	335.0	[0..1]	[218..1]
ATGA1_XENTR - Autophagy-related protein 101 OS=Xenopus tropicalis GN=atg101 PE=2 SV=1	325.0	[0..1]	[218..1]
ATGA1_XENLA - Autophagy-related protein 101 OS=Xenopus laevis GN=atg101 PE=2 SV=1	325.0	[0..1]	[218..1]
gi\|166158094, gi... - gi\|166158094\|ref\|NP_001107455.1\| hypothetical protein LOC100135303 [Xenopus (Silurana) tropicalis], ... ATGA1_DANRE - Autophagy-related protein 101 OS=Danio rerio GN=atg101 PE=2 SV=1	325.0	[0..1]	[218..1]
gi\|220943180 - gi\|220943180\|gb\|ACL84133.1\| CG7053-PA [synthetic construct] CG7053-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7053 (CG7053, FBgn0030960). It is a protein...	322.0	[0..1]	[218..1]
gi\|73996603 - gi\|73996603\|ref\|XP_543661.2\| PREDICTED: similar to CG7053-PA [Canis familiaris]	317.0	[0..1]	[218..1]
gi\|47223784 - gi\|47223784\|emb\|CAF98554.1\| unnamed protein product [Tetraodon nigroviridis]	314.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCRSEVLEV SVEGRQVEEA MLAVLHTVLL HRSTGKFHYK KEGTYSIGTV GIQDVDCDFI  60
   61 DFTYVRVSSE ELDRALRKVV GEFKDALRNS GGDGLGQMSL EFYQKKKSRW PFSDECIPWE 120
  121 VWTVKVHVVA LATEQERQIC REKVGEKLCE KIINIVEVMS RHEYLPKMPT QSEVDNVFDT 180
  181 GLRDVQPYLY KISFQITEAL GTSVTTTMRR LIKDTLAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	1s2hA
Description:	The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits