YRC Public Data Repository - Protein Structure Prediction

Protein:	TRIA1_MOUSE
Organism:	Mus musculus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRIA1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|61864019 - gi\|61864019\|ref\|XP_603511.1\| PREDICTED: similar to p53-inducible cell-survival factor [Bos taurus]	134.0	[0..1]	[76..15]
gi\|37699722 - gi\|37699722\|gb\|AAR00569.1\|U61156_1 WF-1 [Mus musculus]	131.0	[0..1]	[76..1]
ENSCJAT00000002143 - null TRIAP1 - TP53 regulated inhibitor of apoptosis 1 gi\|114647290 - gi\|114647290\|ref\|XP_001160868.1\| PREDICTED: p53-inducible cell-survival factor isoform 2 [Pan troglo... gi\|123992830, gi... - gi\|123999642\|gb\|ABM87362.1\| TP53 regulated inhibitor of apoptosis 1 [synthetic construct], gi\|123992...	131.0	[0..1]	[76..1]
gi\|73994721 - gi\|73994721\|ref\|XP_546335.2\| PREDICTED: similar to p53-inducible cell-survival factor isoform 1 [Can... tr\|M3WEB8\|M3WEB8... - TP53 regulated inhibitor of apoptosis 1 OS=Felis catus GN=TRIAP1 PE=4 SV=1 gi\|112362389, gi... - gi\|119331190\|ref\|NP_001073244.1\| TP53 regulated inhibitor of apoptosis 1 [Bos taurus], gi\|112362389\|...	130.0	[0..1]	[76..1]
gi\|47216457 - gi\|47216457\|emb\|CAG02108.1\| unnamed protein product [Tetraodon nigroviridis]	115.0	[0..1]	[74..1]
TRIAB_XENLA - TP53-regulated inhibitor of apoptosis 1-B OS=Xenopus laevis GN=triap1-b PE=3 SV=1	114.0	[0..1]	[73..1]
gi\|114647292 - gi\|114647292\|ref\|XP_001160829.1\| PREDICTED: similar to 15E1.1 (novel protein) isoform 1 [Pan troglod... gi\|37699742 - gi\|37699742\|gb\|AAR00584.1\|U75688_1 WF-1 [Homo sapiens]	113.0	[0..11]	[76..1]
TRIA1_XENTR - TP53-regulated inhibitor of apoptosis 1 OS=Xenopus tropicalis GN=triap1 PE=2 SV=1	109.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVGEACTD MKREYDQCFN RWFAEKFLKG DGSGDPCTDL FKRYQQCVQK AIKEKEIPIE  60
   61 GLEFMGHGKE KPENSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.920819
Match:	PF05254.3
Description:	No description for PF05254.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.887	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.886	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.827	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.823	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.817	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.814	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.809	N/A	N/A	a.112.1	Description not found.
View	Download	0.805	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.790	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.753	N/A	N/A	a.28.3	Retrovirus capsid protein C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits