YRC Public Data Repository - Protein Structure Prediction

Protein:	PLD3B_MOUSE
Organism:	Mus musculus
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLD3B_MOUSE.

Description	E-value	Query Range	Subject Range
PLD3B_RAT - PRELI domain containing protein 3B OS=Rattus norvegicus GN=Prelid3b PE=1 SV=1	287.0	[0..1]	[195..1]
PLD3B_CRIGR - PRELI domain containing protein 3B OS=Cricetulus griseus GN=PRELID3B PE=2 SV=1	285.0	[0..1]	[195..1]
gi\|74153192 - gi\|74153192\|dbj\|BAE29750.1\| unnamed protein product [Mus musculus]	281.0	[0..1]	[195..1]
gi\|73992400 - gi\|73992400\|ref\|XP_534469.2\| PREDICTED: similar to Protein C20orf45 isoform 1 [Canis familiaris]	280.0	[0..1]	[195..1]
gi\|7705610, gi\|4... - gi\|7705610\|ref\|NP_057129.1\| hypothetical protein LOC51012 [Homo sapiens], gi\|4929683\|gb\|AAD34102.1\|A...	279.0	[0..1]	[190..1]
PLD3B_MACFA - PRELI domain containing protein 3B OS=Macaca fascicularis GN=PRELID3B PE=2 SV=1	279.0	[0..1]	[192..1]
PLD3B_BOVIN - PRELI domain containing protein 3B OS=Bos taurus GN=PRELID3B PE=2 SV=1	279.0	[0..1]	[195..1]
gi\|55653016 - gi\|55653016\|ref\|XP_514752.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	275.0	[0..1]	[192..1]
gi\|109091465 - gi\|109091465\|ref\|XP_001084098.1\| PREDICTED: similar to Protein C20orf45 [Macaca mulatta]	273.0	[0..12]	[192..76]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIWTSEHVF DHPWETVTTA AMQKYPNPMN PSVVGVDVLD RHVDPSGKLH SHRLLSTEWG  60
   61 LPSIVKSLIG AARTKTYVQE HSVVDPVTRT MELKSTNISF TNMVSVDERL TYKPHLQDPE 120
  121 KTVLTQEALI TVKGVSLSSY LEGLMASTIS SNASKGREAM EWVIHKLNAE IEELAASARG 180
  181 SIRTPMAAAA ALVDK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.468521
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits