YRC Public Data Repository - Protein Structure Prediction

Protein:	SRTD3_MOUSE
Organism:	Mus musculus
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRTD3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62945382, gi\|... - gi\|62945382\|ref\|NP_001017513.1\| hypothetical protein LOC499108 [Rattus norvegicus], gi\|60551451\|gb\|A...	234.0	[0..1]	[197..1]
SRTD1_MOUSE - SERTA domain-containing protein 1 OS=Mus musculus GN=Sertad1 PE=1 SV=1	233.0	[0..3]	[197..5]
gi\|19263919 - gi\|19263919\|gb\|AAH25263.1\| Cell division cycle associated 4 [Homo sapiens]	225.0	[0..3]	[197..5]
gi\|116004233, gi... - gi\|73586878\|gb\|AAI03473.1\| SERTA domain containing 3 [Bos taurus], gi\|116004233\|ref\|NP_001070476.1\| ...	225.0	[0..1]	[197..2]
gi\|55641501, gi\|... - gi\|55641501\|ref\|XP_510205.1\| PREDICTED: cell division cycle associated 4 isoform 2 [Pan troglodytes]...	223.0	[0..3]	[197..5]
gi\|73948326 - gi\|73948326\|ref\|XP_855324.1\| PREDICTED: similar to RPA-binding trans-activator [Canis familiaris]	221.0	[0..1]	[197..124]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLKRKHSD LEEEEEEEKW DWSPTALRSY QQALLRISLD KVQRSLGPRA PSLRRHVLIH  60
   61 NTLQQLQAAI RLAPAPALPP EPLFLGEEDF SLSTTIGSIL RELDTSMDEM EPPLNPAASS 120
  121 SPQNEIVSQA DPVFLEALSS RYLGDSGLDD FFLDIDTSAV EKDVALPPPE PPHSLFCSPG 180
  181 SWEWNELDHI MEIILGS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits