YRC Public Data Repository - Protein Structure Prediction

Protein:	PX11C_MOUSE
Organism:	Mus musculus
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PX11C_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|38566102 - gi\|38566102\|gb\|AAH62135.1\| Peroxisomal biogenesis factor 11 gamma [Mus musculus]	262.0	[0..1]	[241..1]
gi\|34870080, gi\|... - gi\|34870080\|ref\|XP_213688.2\| PREDICTED: similar to peroxisomal biogenesis factor 11c [Rattus norvegi...	261.0	[0..1]	[241..1]
PEX11G - peroxisomal biogenesis factor 11 gamma	258.0	[0..1]	[241..1]
gi\|109123166 - gi\|109123166\|ref\|XP_001089739.1\| PREDICTED: similar to peroxisomal biogenesis factor 11 gamma [Macac...	257.0	[0..1]	[241..1]
gi\|114674979 - gi\|114674979\|ref\|XP_512327.2\| PREDICTED: similar to Peroxisomal biogenesis factor 11 gamma [Pan trog...	253.0	[0..1]	[241..1]
gi\|57102054 - gi\|57102054\|ref\|XP_542110.1\| PREDICTED: similar to peroxisomal biogenesis factor 11 gamma [Canis fam...	227.0	[0..1]	[241..1]
gi\|60835489 - gi\|60835489\|gb\|AAX37141.1\| peroxisomal biogenesis factor 11A [synthetic construct]	223.0	[0..4]	[237..1]
gi\|59802984 - gi\|59802984\|gb\|AAX07686.1\| peroxisomal membrane protein-like protein [Magnaporthe grisea] gi\|38099174, gi\|... - gi\|39954150\|ref\|XP_364051.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA46553....	221.0	[0..4]	[234..12]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLNRLASA LESHRVRDRL IRTLGYCCQL IGGVLVEQCP NRSEVGRRLL VVSAQFNHCR  60
   61 TVLRLFDDLA MFVYTKQYGL GTKEEDIFIR WLSVLSNVTD QLYYPCEHIA WAADAKVLRV 120
  121 DSAWWWTLNT ALWTLSLLLG AVKALWTMLK LRQKLRSPTG TSASQLPRSK RRAMEARICS 180
  181 EVLTLLSNLA DLANAVHWLP RGVLWAGRFP PWLVGLMGTI SSILSTCQAV RAGRQAEADS 240
  241 P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits