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View Structure Prediction Details

Protein: gi|16975492, gi|...
Organism: Mus musculus
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16975492, gi|....

Description E-value Query
Range
Subject
Range
gi|109039192 - gi|109039192|ref|XP_001085058.1| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...
183.0 [0..1] [102..285]
SP12_MOUSE, SPCS... - Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=2, (Q9D958) Microsomal signal pe...
174.0 [0..1] [102..1]
SPCS1_PONAB - Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1
SPCS1 - signal peptidase complex subunit 1 homolog (S. cerevisiae)
ENSPTRT00000028110 - null
SPCS1_PONPY - Signal peptidase complex subunit 1 - Pongo pygmaeus (Orangutan)
173.0 [0..1] [102..1]
gi|73985289, gi|... - gi|73985289|ref|XP_858931.1| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...
172.0 [0..1] [102..1]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1
172.0 [0..1] [102..1]
gi|50754117 - gi|50754117|ref|XP_414251.1| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...
159.0 [0..1] [101..100]
gi|118784204, gi... - gi|118784204|ref|XP_313570.3| AGAP004296-PA [Anopheles gambiae str. PEST], gi|116128395|gb|EAA09008....
AGAP004296-PA - signal peptidase complex subunit 1|protein_coding|2R:54159195:54159626:-1|gene:AGAP004296
138.0 [0..7] [99..3]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEHLSSLPT QMDYKGQKLA EQMFQGVILF SAIVGFIYGY VAEQFGWTVY IVMAGFAFSC  60
   61 LLTLPPWPIY RRHPLKWLPV QDLGTEDKKS GDRKIKRHAK NN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 51.568636
Match: PF06645.4
Description: No description for PF06645.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.595 0.312 signal peptidase activity a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.634 0.034 signal peptidase activity a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View Download 0.619 0.033 signal peptidase activity a.24.9 alpha-catenin/vinculin
View Download 0.773 0.008 signal peptidase activity f.17.1 F1F0 ATP synthase subunit C
View Download 0.655 N/A N/A f.17.1 F1F0 ATP synthase subunit C


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle