YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31542600, gi\|...
Organism:	Mus musculus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31542600, gi|....

Description	E-value	Query Range	Subject Range
4EBP1_RAT - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Rattus norvegicus GN=Eif4ebp1 PE=1 ...	180.0	[0..1]	[117..1]
4EBP1_MOUSE - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Mus musculus GN=Eif4ebp1 PE=1 SV=3	179.0	[0..1]	[117..1]
gi\|60652549, gi\|... - gi\|60652549\|gb\|AAX28969.1\| eukaryotic translation initiation factor 4E binding protein 1 [synthetic ...	178.0	[0..1]	[117..1]
gi\|60655649, gi\|... - gi\|60655651\|gb\|AAX32389.1\| eukaryotic translation initiation factor 4E binding protein 1 [synthetic ... gi\|114619677 - gi\|114619677\|ref\|XP_531121.2\| PREDICTED: eukaryotic translation initiation factor 4E binding protein... EIF4EBP1 - eukaryotic translation initiation factor 4E binding protein 1	177.0	[0..1]	[117..1]
gi\|73979318 - gi\|73979318\|ref\|XP_549448.2\| PREDICTED: similar to Eukaryotic translation initiation factor 4E bindi...	170.0	[0..1]	[117..1]
4EBP1_BOVIN - Eukaryotic translation initiation factor 4E-binding protein 1 OS=Bos taurus GN=EIF4EBP1 PE=3 SV=1	170.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGSSCSQT PSRAIPTRRV ALGDGVQLPP GDYSTTPGGT LFSTTPGGTR IIYDRKFLME  60
   61 CRNSPVAKTP PKDLPAIPGV TSPTSDEPPM QANQSQLPSS PEDKRAGGEE SQFEMDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.619789
Match:	PF05456.2
Description:	No description for PF05456.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.285	N/A	N/A	b.53.1	Ribosomal protein L25-like
View	Download	0.216	N/A	N/A	d.120.1	Cytochrome b5

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits