YRC Public Data Repository - Protein Structure Prediction

Protein:	TV23B_MOUSE
Organism:	Mus musculus
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TV23B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109113403 - gi\|109113403\|ref\|XP_001084390.1\| PREDICTED: similar to Protein FAM18B [Macaca mulatta]	322.0	[0..1]	[205..1]
TV23B_PONAB - Golgi apparatus membrane protein TVP23 homolog B OS=Pongo abelii GN=TVP23B PE=2 SV=1 FA18B_PONPY - Protein FAM18B - Pongo pygmaeus (Orangutan)	321.0	[0..1]	[205..1]
gi\|14250060, gi\|... - gi\|148747574\|ref\|NP_057162.4\| hypothetical protein LOC51030 [Homo sapiens], gi\|14250060\|gb\|AAH08430....	321.0	[0..1]	[205..1]
gi\|205277356, gi... - gi\|205277356\|ref\|NP_001101038.2\| hypothetical protein LOC687358 [Rattus norvegicus], gi\|149052915\|gb...	318.0	[0..1]	[205..1]
gi\|114587678 - gi\|114587678\|ref\|XP_511818.2\| PREDICTED: hypothetical protein [Pan troglodytes]	318.0	[0..1]	[205..1]
gi\|73956070 - gi\|73956070\|ref\|XP_546636.2\| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris]	316.0	[0..1]	[205..1]
TV23B_BOVIN - Golgi apparatus membrane protein TVP23 homolog B OS=Bos taurus GN=TVP23B PE=2 SV=1	314.0	[0..1]	[205..1]
gi\|94390429, gi\|... - gi\|94390429\|ref\|XP_980073.1\| PREDICTED: similar to Protein FAM18B [Mus musculus], gi\|149262150\|ref\|X...	309.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQDSNDDT EDVSLFDAEE ETTNRPRKSK IRHPVASFFH LFFRVSAVVV YLLCELLSSS  60
   61 FIACMVTIIL LLSCDFWAVK NVTGRLMVGL RWWNHIDEDG KSHWVFESRK STPQDNKTIS 120
  121 EAESRIFWLG LIACPVLWVI FAFSALFSFR VKWLAVVIMG VVLQGANLYG YIRCKVGSKK 180
  181 NLTSMATSYL GKQFLRQNTG DGQTS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.031517
Match:	PF05832.3
Description:	No description for PF05832.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits