YRC Public Data Repository - Protein Structure Prediction

Protein:	FAM3A_MOUSE
Organism:	Mus musculus
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAM3A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109132854 - gi\|109132854\|ref\|XP_001089464.1\| PREDICTED: similar to family 3, member A protein [Macaca mulatta]	387.0	[0..1]	[229..1]
gi\|109462309, gi... - gi\|62667553\|ref\|XP_577060.1\| PREDICTED: similar to family 3, member A protein [Rattus norvegicus], g...	387.0	[0..1]	[227..1]
FAM3A_PONPY - Protein FAM3A precursor - Pongo pygmaeus (Orangutan) gi\|160213467 - gi\|160213467\|gb\|ABX10995.1\| family with sequence similarity 3, member A (predicted) [Papio anubis] FAM3A_PONAB - Protein FAM3A OS=Pongo abelii GN=FAM3A PE=2 SV=1	387.0	[0..1]	[229..1]
gi\|74009185 - gi\|74009185\|ref\|XP_855396.1\| PREDICTED: similar to family 3, member A protein [Canis familiaris]	385.0	[0..1]	[230..171]
FAM3A - family with sequence similarity 3, member A gi\|190691651, gi... - gi\|190691651\|gb\|ACE87600.1\| family with sequence similarity 3, member A protein [synthetic construct...	371.0	[0..1]	[229..1]
gi\|111307202, gi... - gi\|115495131\|ref\|NP_001069777.1\| family 3, member A protein [Bos taurus], gi\|111307202\|gb\|AAI20369.1...	368.0	[0..1]	[229..1]
gi\|147902657, gi... - gi\|27695185\|gb\|AAH43826.1\| Fam3a-prov protein [Xenopus laevis], gi\|147902657\|ref\|NP_001080471.1\| fam...	359.0	[0..1]	[227..1]
gi\|51258782, gi\|... - gi\|89273835\|emb\|CAJ83684.1\| family with sequence similarity 3, member A [Xenopus tropicalis], gi\|561...	356.0	[0..1]	[227..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLAGPLRIV ALIIIMGLTW ILVTILLGGP GVGLPRIQQF FTSPENSVTA EPRARKYKCG  60
   61 LPQPCPEEHL SFRIVSGAAN VIGPKICLED KMLMSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKDNVGRGLN IALVNGVSGE LLEARAFDMW AGDVNDLLKF IRPLHEGTLV FVASYDDPAT  60
   61 KMNEETRKLF SELGSRNAKD LAFRDSWVFV GAKGVQNKSP FEQHMKNSKH TNKYEGWPEA 120
  121 LEMEGCIPRR SIAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits