YRC Public Data Repository - Protein Structure Prediction

Protein:	PSF1_MOUSE
Organism:	Mus musculus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109093199 - gi\|109093199\|ref\|XP_001107106.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Ma...	320.0	[0..1]	[196..65]
gi\|40788899 - gi\|40788899\|dbj\|BAA11503.2\| KIAA0186 [Homo sapiens]	316.0	[0..1]	[196..31]
GINS1 - GINS complex subunit 1 (Psf1 homolog) gi\|168274446 - gi\|168274446\|dbj\|BAG09643.1\| DNA replication complex GINS protein PSF1 [synthetic construct] gi\|114681346 - gi\|114681346\|ref\|XP_514558.2\| PREDICTED: similar to KIAA0186 isoform 2 [Pan troglodytes]	312.0	[0..1]	[196..1]
gi\|62859211, gi\|... - gi\|62859211\|ref\|NP_001016164.1\| GINS complex subunit 1 [Xenopus (Silurana) tropicalis], gi\|213627123...	312.0	[0..1]	[196..1]
gi\|29365479, gi\|... - gi\|49115013\|gb\|AAH72857.1\| MGC80254 protein [Xenopus laevis], gi\|29365479\|dbj\|BAC66458.1\| Psf1 [Xeno...	310.0	[0..1]	[196..1]
gi\|109471018, gi... - gi\|62646037\|ref\|XP_575258.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 [Rattus...	310.0	[0..1]	[196..1]
gi\|73989584 - gi\|73989584\|ref\|XP_848652.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 isoform...	309.0	[0..1]	[196..1]
PSF1_BOVIN - DNA replication complex GINS protein PSF1 OS=Bos taurus GN=GINS1 PE=2 SV=1	307.0	[0..1]	[196..1]
gi\|94368807 - gi\|94368807\|ref\|XP_001001938.1\| PREDICTED: similar to DNA replication complex GINS protein PSF1 isof...	307.0	[0..1]	[196..1]

Back

Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCEKAMELV RELHRAPEGQ LPAFNEDGLR QVLEEMKALY EQNQSDVNEA KSAGRGDLIP  60
   61 TVKFRHCALL RNRRCTIAYL YDRLLRIRAL RWEYGSVLPN SLRFHMSAEE TEWFNHYKKS 120
  121 LATYMRSLGG DEGLDITQDV KPPKSLYIEV RCLKDYGEFE VDDGTSVLLK KNSQHFLPRW 180
  181 KCEQLIRQGV LEHVLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	2q9qC
Description:	No description for 2q9qC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits