YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12856997, gi\|...
Organism:	Mus musculus
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12856997, gi|....

Description	E-value	Query Range	Subject Range
SEN15_MOUSE - tRNA-splicing endonuclease subunit Sen15 OS=Mus musculus GN=Tsen15 PE=1 SV=1	339.0	[0..1]	[168..1]
TSEN15 - tRNA splicing endonuclease 15 homolog (S. cerevisiae)	311.0	[0..1]	[168..1]
gi\|109019244 - gi\|109019244\|ref\|XP_001109012.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRN...	311.0	[0..1]	[168..46]
gi\|114568358 - gi\|114568358\|ref\|XP_514052.2\| PREDICTED: similar to C1orf19 [Pan troglodytes]	310.0	[0..1]	[168..46]
gi\|115496069, gi... - gi\|74354748\|gb\|AAI03405.1\| TRNA splicing endonuclease 15 homolog (S. cerevisiae) [Bos taurus], gi\|11...	309.0	[0..1]	[168..1]
gi\|149058406, gi... - gi\|27712464\|ref\|XP_213895.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRNA-in...	309.0	[0..1]	[168..1]
gi\|73961158 - gi\|73961158\|ref\|XP_853269.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRNA-in...	280.0	[0..1]	[162..1]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERTSSKPT PGCSGPGPAP VRDGGGAHTW APEDAWMGTH PKYLEMMELD IGDATQVYIA  60
   61 FLVYLDLMES KSWHEVNCVG IPELQLICLL GTEIEGEGLQ TVVPTPISAS LSHNRIREIL 120
  121 KASRKLQGDP ELPMSFTLAI VESDSTIVYY KLTDGFMLPD PQNISLRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	2gw6A
Description:	No description for 2gw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits