YRC Public Data Repository - Protein Structure Prediction

Protein:	RM46_MOUSE
Organism:	Mus musculus
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM46_MOUSE.

Description	E-value	Query Range	Subject Range
RM46_RAT - 39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus GN=Mrpl46 PE=2 SV=1	406.0	[0..1]	[276..1]
MRPL46 - mitochondrial ribosomal protein L46	402.0	[0..1]	[276..1]
gi\|114658725 - gi\|114658725\|ref\|XP_510572.2\| PREDICTED: mitochondrial ribosomal protein L46 isoform 2 [Pan troglody...	399.0	[0..1]	[276..1]
gi\|109082282 - gi\|109082282\|ref\|XP_001088970.1\| PREDICTED: similar to mitochondrial ribosomal protein L46 isoform 2...	384.0	[0..1]	[276..1]
RM46_PONPY - 39S ribosomal protein L46, mitochondrial precursor - Pongo pygmaeus (Orangutan) RM46_PONAB - 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1	377.0	[0..1]	[276..1]
gi\|73951430 - gi\|73951430\|ref\|XP_536185.2\| PREDICTED: similar to mitochondrial ribosomal protein L46 [Canis famili...	370.0	[0..1]	[276..1]
RM46_BOVIN - 39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46 PE=2 SV=1	355.0	[0..1]	[276..1]
gi\|116127281, gi... - gi\|118788447\|ref\|XP_316723.3\| AGAP006684-PA [Anopheles gambiae str. PEST], gi\|116127281\|gb\|EAA11413.... AGAP006684-PA - mRpL46: 39S ribosomal protein L46, mitochondrial\|protein_coding\|2L:36681148:36682028:-1\|gene:AGAP006...	297.0	[0..21]	[275..7]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPVGRTLL GLARGWRQLD RFWAGSSRGL SLEAASSSSR SPWRLSGALC LQRPPLITKA  60
   61 LTPLQEEMAG LLQQIEVERS LYSDHELRAL DEAQRLAKKK ADLYDEEQEQ GITLAQDLED 120
  121 MWEQAFLQFR PGARETEADK KNDRTSLHRK LDRNLVLLVR EKLGDQDVWM LPQVEWQPGE 180
  181 TLRGTAERIL ATLSENNMEA KFLGNAPCGH YKFKFPKAIQ TESDLGVKVF FFKALLLTGD 240
  241 FVQAGKKSRH VWASKEELGD YLQPKYLAQV RRFLLDSDGL SCL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.79
Match:	2a6tA
Description:	Crystal structure of S.pombe mRNA decapping enzyme Dcp2p
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits