YRC Public Data Repository - Protein Structure Prediction

Protein:	FSTL3_MOUSE
Organism:	Mus musculus
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FSTL3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|115893463, gi... - gi\|115930648\|ref\|XP_001178590.1\| PREDICTED: similar to fibropellin Ib [Strongylocentrotus purpuratus...	186.0	[0..13]	[249..1575]
gi\|76619623 - gi\|76619623\|ref\|XP_613831.2\| PREDICTED: similar to Slit homolog 2 protein precursor (Slit-2), partia...	185.0	[0..24]	[256..616]
gi\|114593321 - gi\|114593321\|ref\|XP_001163176.1\| PREDICTED: slit homolog 2 isoform 1 [Pan troglodytes]	175.0	[0..24]	[256..924]
SLIT2 - slit homolog 2 (Drosophila)	173.0	[0..24]	[256..921]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGALWPLL WGALVWTVGS VGAVMGSEDS VPGGVCWLQQ GREATCSLVL KTRVSREECC  60
   61 ASGNINTAWS NFTHPGNKIS LLGFLGLVHC LPCKDSCDGV ECGPGKACRM LGGRPHCECV 120
  121 PNCEGLPAGF QVCGSDGATY RDECELRTAR CRGHPDLRVM YRGRCQKSCA QVVCPRPQSC 180
  181 LVDQTGSAHC VVCRAAPCPV PSNPGQELCG NNNVTYISSC HLRQATCFLG RSIGVRHPGI 240
  241 CTGGPKVPAE EEENFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.221849
Match:	2b0uC
Description:	The Structure of the Follistatin:Activin Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits