YRC Public Data Repository - Protein Structure Prediction

Protein:	GAR1_MOUSE
Organism:	Mus musculus
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAR1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26344814 - gi\|26344814\|dbj\|BAC36056.1\| unnamed protein product [Mus musculus]	207.0	[0..70]	[179..70]
GAR1_RAT - H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1	206.0	[0..71]	[179..62]
gi\|123994963, gi... - gi\|157928874\|gb\|ABW03722.1\| nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs) [synth... GAR1 - GAR1 ribonucleoprotein homolog (yeast)	201.0	[0..73]	[179..62]
gi\|55623056 - gi\|55623056\|ref\|XP_517393.1\| PREDICTED: similar to nucleolar protein family A member 1 [Pan troglody...	201.0	[0..73]	[179..62]
gi\|47227468 - gi\|47227468\|emb\|CAG04616.1\| unnamed protein product [Tetraodon nigroviridis]	201.0	[0..72]	[179..46]
gi\|78369061, gi\|... - gi\|78369061\|ref\|NP_001030380.1\| nucleolar protein family A, member 1 [Bos taurus], gi\|61553379\|gb\|AA...	198.0	[0..73]	[179..58]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGGRGG FNRGGGGGGF NRGGGSNNHF RGGGGGGGGS FRGGGGGGGG SFRGGGRGGF  60
   61 GRGGGRGGFN KFQDQGPPER VVLLGEFMHP CEDDIVCKCT TEENKVPYFN APVYLENKEQ 120
  121 VGKVDEIFGQ LRDFYFSVKL SENMKASSFK KLQKFYIDPY KLLPLQRFLP RPPGEKGPPR 180
  181 GGGGGGRGGR GGGRGGGGRG GGRGGGFRGG RGGGGGFRGG RGGGGFRGRG H

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.83
Match:	2v3mA
Description:	No description for 2v3mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits