YRC Public Data Repository - Protein Structure Prediction

Protein:	REP15_MOUSE
Organism:	Mus musculus
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REP15_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|19353875 - gi\|19353875\|gb\|AAH24344.1\| 2210417D09Rik protein [Mus musculus]	474.0	[0..1]	[230..1]
gi\|109474506, gi... - gi\|62648340\|ref\|XP_575724.1\| PREDICTED: similar to 2210417D09Rik protein [Rattus norvegicus], gi\|157...	448.0	[0..1]	[230..1]
gi\|41202064, gi\|... - gi\|71274164\|ref\|NP_001025045.1\| RAB15 effector protein [Homo sapiens], ref\|XP_370686.1\| PREDICTED: s...	443.0	[0..1]	[230..1]
gi\|114645541 - gi\|114645541\|ref\|XP_001142876.1\| PREDICTED: Rab15 effector protein [Pan troglodytes]	442.0	[0..1]	[230..1]
gi\|109096007 - gi\|109096007\|ref\|XP_001103747.1\| PREDICTED: similar to Rab15 effector protein [Macaca mulatta]	417.0	[0..1]	[230..1]
gi\|76638673 - gi\|76638673\|ref\|XP_871253.1\| PREDICTED: similar to Rab15 effector protein [Bos taurus]	386.0	[0..1]	[230..1]
gi\|47210983 - gi\|47210983\|emb\|CAF95402.1\| unnamed protein product [Tetraodon nigroviridis]	84.0	[0..28]	[218..65]
gi\|68405416 - gi\|68405416\|ref\|XP_694288.1\| PREDICTED: similar to RIKEN cDNA 2210417D09 [Danio rerio]	83.0	[0..25]	[178..11]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKASQQVA PKDSQEVLAM CEVVSAAISH AAQKLKEYLG FEYPLSRLCL AASSLTEVFL  60
   61 VHFVTFCQER GADEWLTTTK MTKHQAWLFG ADWIWTFWGP DKQIRLQVAV QTLRMASLPL 120
  121 TDPKSCESRG EESWKKGRFD KLQEFCNLVG EDCLGLFIIF GVPGEPKAIR GVVLESVRNG 180
  181 MMESQLPGRK AVEQFVLETK DCISIKELLG NCLSKRDGLS DMGRVYIRIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits