YRC Public Data Repository - Protein Structure Prediction

Protein:	MIS12_MOUSE
Organism:	Mus musculus
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIS12_MOUSE.

Description	E-value	Query Range	Subject Range
MIS12_RAT - Protein MIS12 homolog OS=Rattus norvegicus GN=Mis12 PE=2 SV=2	349.0	[0..1]	[206..1]
HGNC:24967\|MIM:6... - MIND kinetochore complex component, homolog (S. pombe) MIS12_PONAB - Protein MIS12 homolog OS=Pongo abelii GN=MIS12 PE=2 SV=1 MIS12_PONPY - Protein MIS12 homolog - Pongo pygmaeus (Orangutan) gi\|114665993, gi... - gi\|55644907\|ref\|XP_523561.1\| PREDICTED: MIS12 homolog isoform 7 [Pan troglodytes], gi\|114665993\|ref\|... MIS12 - MIS12, MIND kinetochore complex component, homolog (S. pombe) gi\|117645936, gi... - gi\|117645936\|emb\|CAL38435.1\| hypothetical protein [synthetic construct], gi\|117644768\|emb\|CAL37850.1...	349.0	[0..1]	[204..1]
gi\|74204878 - gi\|74204878\|dbj\|BAE20937.1\| unnamed protein product [Mus musculus]	345.0	[0..1]	[206..1]
gi\|109112949, gi... - gi\|109112949\|ref\|XP_001101672.1\| PREDICTED: similar to MIS12 homolog isoform 2 [Macaca mulatta], gi\|...	344.0	[0..1]	[204..1]
MIS12_BOVIN - Protein MIS12 homolog OS=Bos taurus GN=MIS12 PE=2 SV=1	326.0	[0..1]	[204..1]
gi\|73956301 - gi\|73956301\|ref\|XP_545523.2\| PREDICTED: similar to MIS12 homolog [Canis familiaris]	294.0	[0..1]	[204..1]
gi\|31419547, gi\|... - gi\|41055205\|ref\|NP_956672.1\| MIS12 homolog [Danio rerio], gi\|31419547\|gb\|AAH53260.1\| Zgc:64116 [Dani...	291.0	[0..8]	[204..16]
MIS12_CHICK - Protein MIS12 homolog OS=Gallus gallus GN=MIS12 PE=2 SV=1	247.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDPMAYEA QFFGFTPQTC LLRIYVAFQD HLFEVMQAVE QVILKKLEDI PNCEITPVQT  60
   61 RKCTEKFLCF MKGRFDNLFG KMEQLILQSI LCIPPNILLP EDKCQETNPF SEEKLELLQQ 120
  121 EIKELQEKYK VELCTEQALL AELEEQKTVK AKLRETLTFF DELENIGRYQ GTSNFRESLA 180
  181 SLVQSCRKLQ SIRDNVEKES RRLETQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.59
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits