YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGC_MOUSE
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114565452, gi... - gi\|114565458\|ref\|XP_001147637.1\| PREDICTED: similar to phosphatidylinositol-glycan-class C (PIG-C) i...	404.0	[0..1]	[297..1]
PIGC_RAT - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=...	404.0	[0..1]	[297..1]
gi\|109019529, gi... - gi\|109019529\|ref\|XP_001100645.1\| PREDICTED: phosphatidylinositol glycan, class C isoform 3 [Macaca m... CCDS1302.1_1 - null	404.0	[0..1]	[297..1]
PIGC - phosphatidylinositol glycan anchor biosynthesis, class C gi\|61361835, gi\|... - gi\|61361840\|gb\|AAX42112.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|61361835\|gb...	403.0	[0..1]	[297..1]
gi\|30584777, gi\|... - gi\|60653763\|gb\|AAX29575.1\| phosphatidylinositol glycan class C [synthetic construct], gi\|60653761\|gb...	402.0	[0..1]	[297..1]
gi\|74217526 - gi\|74217526\|dbj\|BAE33529.1\| unnamed protein product [Mus musculus]	402.0	[0..1]	[297..1]
gi\|57088997 - gi\|57088997\|ref\|XP_537194.1\| PREDICTED: similar to Phosphatidylinositol N-acetylglucosaminyltransfer...	401.0	[0..1]	[297..1]
PIGC_BOVIN - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1	400.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAQRVTDTP EVKWQKVLYE RQPFPDNYVD QRFLEELRKN IYARKYQYWA VVFESSVVIQ  60
   61 QLCSVCVFVV IWWYMDEGLL APQWLFGTGL ASSLVGYVLF DLIDGGDG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKKSGRTRWA DLKSTLVFIT FTYGFSPVLK TLTESVSTDT IYAMAVFMLL GHLIFFDYGA  60
   61 NAAIVSSTLS LNMAIFASVC LASRLPRSLH AFIMVTFAIQ IFALWPMLQK KLKAYTPRSY 120
  121 VGVTLLFAFS AFGGLLSISA VGAILFALLL FSISCLCPYY LIHLQLFKEN IHGPWDEAEI 180
  181 KEDLSRFLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits