YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21312132, gi\|...
Organism:	Mus musculus
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21312132, gi|....

Description	E-value	Query Range	Subject Range
C7orf50 - chromosome 7 open reading frame 50	158.0	[0..1]	[178..1]
CG050_RAT - Uncharacterized protein C7orf50 homolog OS=Rattus norvegicus PE=1 SV=1	155.0	[0..1]	[175..1]
gi\|114625409 - gi\|114625409\|ref\|XP_001140777.1\| PREDICTED: similar to MGC11257 protein isoform 1 [Pan troglodytes]	155.0	[0..1]	[178..1]
gi\|90075580 - gi\|90075580\|dbj\|BAE87470.1\| unnamed protein product [Macaca fascicularis] gi\|109065808 - gi\|109065808\|ref\|XP_001085006.1\| PREDICTED: hypothetical protein [Macaca mulatta]	154.0	[0..1]	[175..1]
gi\|42547256, gi\|... - gi\|46137481\|ref\|XP_390432.1\| hypothetical protein FG10256.1 [Gibberella zeae PH-1], gi\|42547256\|gb\|E...	153.0	[0..5]	[173..14]
gi\|35193005 - gi\|35193005\|gb\|AAH58580.1\| 3110082I17Rik protein [Mus musculus]	141.0	[0..1]	[141..1]
gi\|190406452 - gi\|190406452\|gb\|EDV09719.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207347322 - gi\|207347322\|gb\|EDZ73530.1\| YCR016Wp-like protein [Saccharomyces cerevisiae AWRI1631] YCR016W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YCQ6_YEAST - Uncharacterized protein YCR016W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR016W ...	125.0	[0..1]	[168..12]
gi\|76654405 - gi\|76654405\|ref\|XP_601128.2\| PREDICTED: hypothetical protein XP_601128 [Bos taurus]	125.0	[0..47]	[172..3]
gi\|73958242 - gi\|73958242\|ref\|XP_848469.1\| PREDICTED: similar to CG15877-PA [Canis familiaris]	124.0	[0..89]	[178..58]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHKRKGLE GTGKESKRQK ITPAEETRRT SEAGPDKETA STLVQEASPE LSPEERRVLE  60
   61 RKLKKERKKE EKKRLREAGI AATQTAKVQT LPAKPSAATL ALEYLQGWAQ KQESWRFQKT 120
  121 RQTWLLLHMY DEDKVPDEHF PTLLDYLEGL RGSARELTVR KAEALMQKLD EAEPEDSGGL 180
  181 AGRCSASTRC CSCSPSGARA LTGYLLPELW EHTCPQQVSW PES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits