YRC Public Data Repository - Protein Structure Prediction

Protein:	VN1A8_MOUSE
Organism:	Mus musculus
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VN1A8_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|71361647, gi\|... - gi\|71361647\|ref\|NP_776256.2\| vomeronasal 1 receptor 4 [Homo sapiens], gi\|32493188\|gb\|AAP85619.1\| phe...	334.0	[0..6]	[279..1]
gi\|114678742 - gi\|114678742\|ref\|XP_001162685.1\| PREDICTED: similar to V1R-like receptor 2 [Pan troglodytes]	328.0	[0..18]	[277..170]
gi\|16716549, gi\|... - gi\|16716549\|ref\|NP_444463.1\| vomeronasal 1 receptor, C3 [Mus musculus], gi\|11967419\|gb\|AAG42093.1\|AF...	318.0	[0..11]	[272..2]
gi\|40557353, gi\|... - gi\|57164047\|ref\|NP_001009527.1\| vomeronasal 1 receptor, C42 [Rattus norvegicus], gi\|40557353\|gb\|AAR8...	314.0	[0..11]	[275..2]

Back

Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDHTLYCS VYIRNAFFSE IGIGISANSC LLLFHTFMFI RGHRPRLTDL PIGFVALIHL  60
   61 VMLLLAAYIT EDFFMSSGGW DDITCKLVIF LHRFFRSLSV CATCLLSVFQ AIILCPQSSH 120
  121 LAKLKQNSPH QLSYFFIFLS IFYTSISSQI LIAAIPTQNI TFVNLIYITN SCSFLPLSSS 180
  181 MQHTFSTLLT FRNVFVIGLM GLSTCYMATL LCRHKTRSQR LQNSKLSPKA TPEQRALRTI 240
  241 LMLMSFFLLM STFDSIISYS RTIITGKSTA LLCPDSCRS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.26
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits