YRC Public Data Repository - Protein Structure Prediction

Protein:	ROP1L_MOUSE
Organism:	Mus musculus
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROP1L_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|55930885, gi\|... - gi\|55930885\|gb\|AAH48680.1\| Ropporin 1-like [Mus musculus], gi\|38174583\|gb\|AAH60990.1\| Ropporin 1-lik...	349.0	[0..1]	[218..1]
gi\|17572807, gi\|... - gi\|17572807\|ref\|NP_114122.2\| ropporin 1-like [Homo sapiens], gi\|119628469\|gb\|EAX08064.1\| ropporin 1-...	341.0	[0..1]	[222..1]
ROP1L_MACFA - Ropporin-1-like protein OS=Macaca fascicularis GN=ROPN1L PE=2 SV=1	340.0	[0..1]	[230..1]
gi\|109466262, gi... - gi\|109466262\|ref\|XP_001065890.1\| PREDICTED: similar to A-kinase anchoring protein-associated sperm p...	340.0	[0..1]	[218..143]
gi\|114598972, gi... - gi\|55623918\|ref\|XP_517631.1\| PREDICTED: AKAP-associated sperm protein isoform 3 [Pan troglodytes], g...	339.0	[0..1]	[222..1]
ROP1L_BOVIN - Ropporin-1-like protein OS=Bos taurus GN=ROPN1L PE=2 SV=1	334.0	[0..1]	[218..1]
gi\|74003076 - gi\|74003076\|ref\|XP_535790.2\| PREDICTED: similar to AKAP-associated sperm protein [Canis familiaris]	329.0	[0..1]	[218..1]
gi\|109076733 - gi\|109076733\|ref\|XP_001085948.1\| PREDICTED: similar to AKAP-associated sperm protein [Macaca mulatta...	305.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPDTMFCA QQIHIPPELP DILKQFTKAA IRTQPADVLQ WSAGYFSALS RGDPLPVKDR  60
   61 IEMPVATQKT DT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTQGLLKVL HKQCSHKQYV ELADLEKKWK NLCLPVEKLR TILELDPCED KIEWIKFLAL  60
   61 GCSSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [138-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRTLNTAMKN VCEILTSDPE GGPARIPFET FAYVYQYLSG LDPELPAVET ENYLTSLRLM  60
   61 SESRKNGMIG LSDFFVEKDN IESLEEKALE AEH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits