YRC Public Data Repository - Protein Structure Prediction

Protein:	GPX8_MOUSE
Organism:	Mus musculus
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPX8_MOUSE.

Description	E-value	Query Range	Subject Range
GPX8 - glutathione peroxidase 8 (putative)	176.0	[0..1]	[209..1]
gi\|109077245 - gi\|109077245\|ref\|XP_001098032.1\| PREDICTED: similar to Phospholipid hydroperoxide glutathione peroxi...	176.0	[0..1]	[209..1]
gi\|114600282, gi... - gi\|55624312\|ref\|XP_517762.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146002...	175.0	[0..1]	[209..1]
GPX8B_XENLA - Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-b PE=2 SV=1	175.0	[0..1]	[209..1]
gi\|157823095, gi... - gi\|34854167\|ref\|XP_215486.2\| PREDICTED: similar to F26E4.12 [Rattus norvegicus], gi\|157823095\|ref\|NP...	172.0	[0..1]	[209..1]
gi\|18044310 - gi\|18044310\|gb\|AAH19664.1\| Glutathione peroxidase 8 (putative) [Mus musculus]	170.0	[0..1]	[209..1]
GPX8_BOVIN - Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1	170.0	[0..1]	[209..1]
gi\|50796088 - gi\|50796088\|ref\|XP_423834.1\| PREDICTED: similar to LOC495339 protein [Gallus gallus]	169.0	[0..1]	[209..1]
gi\|57042784 - gi\|57042784\|ref\|XP_535237.1\| PREDICTED: similar to F26E4.12 isoform 1 [Canis familiaris]	167.0	[0..1]	[209..1]
gi\|6179600 - gi\|6179600\|emb\|CAB59893.1\| GPX12Hv, glutathione peroxidase-like protein [Hordeum vulgare subsp. vulg...	167.0	[0..5]	[199..23]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPFAAYPLK CSGPKAKIFA VLLSMVLCTV MLFLLQLKFL KPRTNSFYSF EVKDAKGRTV  60
   61 SLEKFKGKAS LVVNVASDCR FTDKSYQTLR ELHKEFGPYH FNVLAFPCNQ FGESEPKSSK 120
  121 EVESFARQNY GVTFPIFHKI KILGPEAEPA FRFIVDSSKK EPRWNFWKYL VNPEGQVVKF 180
  181 WRPEEPLEAI RPHVSQMIGQ IILKKKEDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.154902
Match:	2p31A
Description:	No description for 2p31A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits