YRC Public Data Repository - Protein Structure Prediction

Protein:	LIN52_MOUSE
Organism:	Mus musculus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIN52_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109084300 - gi\|109084300\|ref\|XP_001093490.1\| PREDICTED: similar to lin-52 CG15929-PA [Macaca mulatta]	206.0	[0..1]	[116..33]
gi\|94392140, gi\|... - gi\|94392140\|ref\|XP_991915.1\| PREDICTED: similar to lin-52 CG15929-PA [Mus musculus], gi\|82935391\|ref...	193.0	[0..1]	[116..1]
LIN52_PONAB - Protein lin-52 homolog OS=Pongo abelii GN=LIN52 PE=3 SV=1 LIN52_PONPY - Lin-52 homolog - Pongo pygmaeus (Orangutan)	187.0	[0..1]	[116..1]
gi\|76628400 - gi\|76628400\|ref\|XP_875524.1\| PREDICTED: hypothetical protein [Bos taurus] gi\|193785810, gi... - gi\|193785810\|dbj\|BAG51245.1\| unnamed protein product [Homo sapiens], gi\|119601567\|gb\|EAW81161.1\| chr...	186.0	[0..5]	[116..1]
gi\|109478508, gi... - ref\|XP_343090.1\| similar to CG15929-PA [Rattus norvegicus], gi\|109479660\|ref\|XP_001056671.1\| PREDICT...	185.0	[0..5]	[116..1]
LIN52_ONCMY - Protein lin-52 homolog OS=Oncorhynchus mykiss GN=lin52 PE=2 SV=1	183.0	[0..5]	[116..1]
LIN52_CHICK - Protein lin-52 homolog OS=Gallus gallus GN=LIN52 PE=1 SV=1	181.0	[0..5]	[116..1]
gi\|114653860 - gi\|114653860\|ref\|XP_510059.2\| PREDICTED: hypothetical protein [Pan troglodytes]	180.0	[0..1]	[98..33]
LIN52_TETNG - Protein lin-52 homolog OS=Tetraodon nigroviridis GN=lin52 PE=3 SV=1	176.0	[0..5]	[116..1]
gi\|163915898, gi... - gi\|62857655\|ref\|NP_001016782.1\| hypothetical protein LOC549536 [Xenopus (Silurana) tropicalis], gi\|1...	171.0	[0..5]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWKMASPTD GTDLEASLLS FEKLDRASPD LWPEQLPGVA EFAASFKSPI TSSPPKWMAE  60
   61 IERDDIDMLK ELGSLTTANL MEKVRGLQNL AYQLGLDESR EMTRGKFLNI LEKPKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.393	d.112.1	Phoshotransferase/anion transport protein
View	Download	0.369	a.1.1	Globin-like
View	Download	0.369	a.1.1	Globin-like
View	Download	0.369	d.58.50	Description not found.
View	Download	0.355	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain
View	Download	0.299	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.299	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.297	b.84.2	Rudiment single hybrid motif
View	Download	0.297	a.11.1	Acyl-CoA binding protein
View	Download	0.288	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits