YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP23_MOUSE
Organism:	Mus musculus
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP23_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|4867999 - gi\|4867999\|gb\|AAD31085.1\|AF078164_1 Ku70-binding protein [Homo sapiens]	319.0	[0..1]	[193..43]
gi\|60654265 - gi\|60654265\|gb\|AAX29825.1\| Ku70-binding protein 3 [synthetic construct]	319.0	[0..1]	[193..1]
gi\|76618829 - gi\|76618829\|ref\|XP_591797.2\| PREDICTED: similar to Ku70-binding protein 3 [Bos taurus]	307.0	[0..1]	[193..106]
gi\|114643993 - gi\|114643993\|ref\|XP_509179.2\| PREDICTED: similar to Ku70-binding protein [Pan troglodytes]	297.0	[0..1]	[193..97]
gi\|109481398, gi... - gi\|109482062\|ref\|XP_001055307.1\| PREDICTED: similar to Ku70-binding protein 3 [Rattus norvegicus], g...	285.0	[0..18]	[193..101]
gi\|109097394 - gi\|109097394\|ref\|XP_001102089.1\| PREDICTED: similar to Ku70-binding protein 3 [Macaca mulatta]	265.0	[0..27]	[193..50]
gi\|73968597 - gi\|73968597\|ref\|XP_531653.2\| PREDICTED: similar to Ku70-binding protein 3 [Canis familiaris]	257.0	[0..23]	[193..44]
ATP23_XENLA - Mitochondrial inner membrane protease ATP23 homolog OS=Xenopus laevis PE=2 SV=1	250.0	[0..22]	[193..17]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAPGGGEL GPAAGEPLLQ RPDSGQGSPE PPAHGKPQQG FLSSLFTRDQ SCPLMLQKTL  60
   61 DTN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYVKLLLDAM KHSGCAVNRG RHFSCEVCDG NVSGGFDAST SQIVLCENNI RNQAHMGRVV  60
   61 THELIHAFDH CRAHVHWFTN IRHLACSEIR AASLSGDCSL VNELFRLRFG LKQHHQIETS 120
  121 CVSRPAMNSQ SCLGLVSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits